The fundamental tradeoff in genomes and proteomes of prokaryotes established by the genetic code, codon entropy, and physics of nucleic acids and proteins

Protein Thermostability Prediction within Homologous Families Using Temperature-Dependent Statistical Potentials

(2014) Fabrizio Pucci et al.   PLoS One

Molecular mechanisms of adaptation emerging from the physics and evolution of nucleic acids and proteins

(2013) A. Goncearenco et al.   NUCLEIC ACIDS RESEARCH

On the molecular mechanism of GC content variation among eubacterial genomes

(2012) Hao Wu et al.   Biology Direct

A pursuit of lineage-specific and niche-specific proteome features in the world of archaea

(2012) Anindya Roy Chowdhury et al.   BMC GENOMICS

Structure-based mutant stability predictions on proteins of unknown structure

(2012) Giulia Gonnelli et al.   JOURNAL OF BIOTECHNOLOGY

Faster than Neutral Evolution of Constrained Sequences: The Complex Interplay of Mutational Biases and Weak Selection

(2011) David S. Lawrie et al.   Genome Biology and Evolution

Thermo- and Mesostabilizing Protein Interactions Identified by Temperature-Dependent Statistical Potentials

(2010) Benjamin Folch et al.   BIOPHYSICAL JOURNAL

Thermophilic Adaptation of Protein Complexes Inferred from Proteomic Homology Modeling

(2010) Bin-Guang Ma et al.   STRUCTURE

Evidence of Selection upon Genomic GC-Content in Bacteria

(2010) Falk Hildebrand et al.   PLoS Genetics

Mutational Patterns Cannot Explain Genome Composition: Are There Any Neutral Sites in the Genomes of Bacteria?

(2010) Eduardo P. C. Rocha et al.   PLoS Genetics

Evidence That Mutation Is Universally Biased towards AT in Bacteria

(2010) Ruth Hershberg et al.   PLoS Genetics

Trends in Prokaryotic Evolution Revealed by Comparison of Closely Related Bacterial and Archaeal Genomes

(2008) P. S. Novichkov et al.   JOURNAL OF BACTERIOLOGY

Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world

(2008) E. V. Koonin et al.   NUCLEIC ACIDS RESEARCH

Revisiting the correlation between proteins' thermoresistance and organisms' thermophilicity

(2008) Yves Dehouck et al.   PROTEIN ENGINEERING DESIGN & SELECTION

Do viral proteins possess unique biophysical features?

(2008) Nobuhiko Tokuriki et al.   TRENDS IN BIOCHEMICAL SCIENCES

Thermostability of Salt Bridges versus Hydrophobic Interactions in Proteins Probed by Statistical Potentials

(2007) Benjamin Folch et al.   Journal of Chemical Information and Modeling