Molecular mechanisms of adaptation emerging from the physics and evolution of nucleic acids and proteins

On the molecular mechanism of GC content variation among eubacterial genomes

(2012) Hao Wu et al.   Biology Direct

Does the central dogma still stand?

(2012) Eugene V Koonin   Biology Direct

A pursuit of lineage-specific and niche-specific proteome features in the world of archaea

(2012) Anindya Roy Chowdhury et al.   BMC GENOMICS

Structure-based mutant stability predictions on proteins of unknown structure

(2012) Giulia Gonnelli et al.   JOURNAL OF BIOTECHNOLOGY

Thermo- and Mesostabilizing Protein Interactions Identified by Temperature-Dependent Statistical Potentials

(2010) Benjamin Folch et al.   BIOPHYSICAL JOURNAL

Thermophilic Adaptation of Protein Complexes Inferred from Proteomic Homology Modeling

(2010) Bin-Guang Ma et al.   STRUCTURE

Stability effects of mutations and protein evolvability

(2009) Nobuhiko Tokuriki et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Protein Dynamism and Evolvability

(2009) N. Tokuriki et al.   SCIENCE

Trends in Prokaryotic Evolution Revealed by Comparison of Closely Related Bacterial and Archaeal Genomes

(2008) P. S. Novichkov et al.   JOURNAL OF BACTERIOLOGY

An Assessment of the Impacts of Molecular Oxygen on the Evolution of Proteomes

(2008) S. Vieira-Silva et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world

(2008) E. V. Koonin et al.   NUCLEIC ACIDS RESEARCH

Revisiting the correlation between proteins' thermoresistance and organisms' thermophilicity

(2008) Yves Dehouck et al.   PROTEIN ENGINEERING DESIGN & SELECTION

Do viral proteins possess unique biophysical features?

(2008) Nobuhiko Tokuriki et al.   TRENDS IN BIOCHEMICAL SCIENCES

Thermostability of Salt Bridges versus Hydrophobic Interactions in Proteins Probed by Statistical Potentials

(2007) Benjamin Folch et al.   Journal of Chemical Information and Modeling