G-BLASTN: accelerating nucleotide alignment by graphics processors

CUSHAW: a CUDA compatible short read aligner to large genomes based on the Burrows–Wheeler transform

(2012) Yongchao Liu et al.   BIOINFORMATICS

SOAP3: ultra-fast GPU-based parallel alignment tool for short reads

(2012) C.-M. Liu et al.   BIOINFORMATICS

High-performance short sequence alignment with GPU acceleration

(2012) Mian Lu et al.   DISTRIBUTED AND PARALLEL DATABASES

GPU-BLAST: using graphics processors to accelerate protein sequence alignment

(2010) P. D. Vouzis et al.   BIOINFORMATICS

GPU computing for systems biology

(2010) L. Dematte et al.   BRIEFINGS IN BIOINFORMATICS

PLAST: parallel local alignment search tool for database comparison

(2009) Van Hoa Nguyen et al.   BMC BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Database indexing for production MegaBLAST searches

(2008) Aleksandr Morgulis et al.   BIOINFORMATICS

CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment

(2008) Svetlin A Manavski et al.   BMC BIOINFORMATICS

GPU Computing

(2008) J.D. Owens et al.   PROCEEDINGS OF THE IEEE