CUSHAW: a CUDA compatible short read aligner to large genomes based on the Burrows–Wheeler transform
出版年份 2012 全文链接
标题
CUSHAW: a CUDA compatible short read aligner to large genomes based on the Burrows–Wheeler transform
作者
关键词
-
出版物
BIOINFORMATICS
Volume 28, Issue 14, Pages 1830-1837
出版商
Oxford University Press (OUP)
发表日期
2012-05-11
DOI
10.1093/bioinformatics/bts276
参考文献
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- (2011) Jochen Blom et al. BIOINFORMATICS
- DecGPU: distributed error correction on massively parallel graphics processing units using CUDA and MPI
- (2011) Yongchao Liu et al. BMC BIOINFORMATICS
- GPU-BLAST: using graphics processors to accelerate protein sequence alignment
- (2010) P. D. Vouzis et al. BIOINFORMATICS
- CompleteMOTIFs: DNA motif discovery platform for transcription factor binding experiments
- (2010) Lakshmi Kuttippurathu et al. BIOINFORMATICS
- Fast and accurate long-read alignment with Burrows–Wheeler transform
- (2010) Heng Li et al. BIOINFORMATICS
- PASS: a program to align short sequences
- (2009) D. Campagna et al. BIOINFORMATICS
- SOAP2: an improved ultrafast tool for short read alignment
- (2009) R. Li et al. BIOINFORMATICS
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- CUDA–MEME: Accelerating motif discovery in biological sequences using CUDA-enabled graphics processing units
- (2009) Yongchao Liu et al. PATTERN RECOGNITION LETTERS
- BFAST: An Alignment Tool for Large Scale Genome Resequencing
- (2009) Nils Homer et al. PLoS One
- SHRiMP: Accurate Mapping of Short Color-space Reads
- (2009) Stephen M. Rumble et al. PLoS Computational Biology
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- Compressed indexing and local alignment of DNA
- (2008) T. W. Lam et al. BIOINFORMATICS
- SOAP: short oligonucleotide alignment program
- (2008) R. Li et al. BIOINFORMATICS
- Using quality scores and longer reads improves accuracy of Solexa read mapping
- (2008) Andrew D Smith et al. BMC BIOINFORMATICS
- Mapping short DNA sequencing reads and calling variants using mapping quality scores
- (2008) H. Li et al. GENOME RESEARCH
- NVIDIA Tesla: A Unified Graphics and Computing Architecture
- (2008) Erik Lindholm et al. IEEE MICRO
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