Global network alignment using multiscale spectral signatures

Structural distance and evolutionary relationship of networks

(2011) Anirban Banerjee   BIOSYSTEMS

Combining modularity, conservation, and interactions of proteins significantly increases precision and coverage of protein function prediction

(2011) Samira Jaeger et al.   BMC GENOMICS

A Tensor-Based Algorithm for High-Order Graph Matching

(2011) O. Duchenne et al.   IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE

A variable selection method for genome-wide association studies

(2010) Qianchuan He et al.   BIOINFORMATICS

Topological network alignment uncovers biological function and phylogeny

(2010) O. Kuchaiev et al.   Journal of the Royal Society Interface

IsoBase: a database of functionally related proteins across PPI networks

(2010) D. Park et al.   NUCLEIC ACIDS RESEARCH

HitPredict: a database of quality assessed protein–protein interactions in nine species

(2010) Ashwini Patil et al.   NUCLEIC ACIDS RESEARCH

IsoRankN: spectral methods for global alignment of multiple protein networks

(2009) C.-S. Liao et al.   BIOINFORMATICS

Global alignment of protein-protein interaction networks by graph matching methods

(2009) M. Zaslavskiy et al.   BIOINFORMATICS

A new graph-based method for pairwise global network alignment

(2009) Gunnar W Klau   BMC BIOINFORMATICS

Automatic Parameter Learning for Multiple Local Network Alignment

(2009) Jason Flannick et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Semantic Similarity in Biomedical Ontologies

(2009) Catia Pesquita et al.   PLoS Computational Biology

The Modular Organization of Protein Interactions in Escherichia coli

(2009) José M. Peregrín-Alvarez et al.   PLoS Computational Biology

Fast Gene Ontology based clustering for microarray experiments

(2009) Kristian Ovaska et al.   BioData Mining

A Large Scale Analysis of Protein-Protein Interactions in the Nitrogen-fixing Bacterium Mesorhizobium loti

(2008) Y. Shimoda et al.   DNA RESEARCH

A study of graph spectra for comparing graphs and trees

(2008) Richard C. Wilson et al.   PATTERN RECOGNITION

Global alignment of multiple protein interaction networks with application to functional orthology detection

(2008) R. Singh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA