标题
Efficient searching and annotation of metabolic networks using chemical similarity
作者
关键词
-
出版物
BIOINFORMATICS
Volume 31, Issue 7, Pages 1016-1024
出版商
Oxford University Press (OUP)
发表日期
2014-11-23
DOI
10.1093/bioinformatics/btu760
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Metabolome-scale prediction of intermediate compounds in multistep metabolic pathways with a recursive supervised approach
- (2014) Masaaki Kotera et al. BIOINFORMATICS
- Heterologous expression and characterization of bacterial 2-C-methyl-d-erythritol-4-phosphate pathway in Saccharomyces cerevisiae
- (2013) Simon Carlsen et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- A systematic comparison of the MetaCyc and KEGG pathway databases
- (2013) Tomer Altman et al. BMC BIOINFORMATICS
- In Silico Enzymatic Synthesis of a 400 000 Compound Biochemical Database for Nontargeted Metabolomics
- (2013) Lochana C. Menikarachchi et al. Journal of Chemical Information and Modeling
- Microbial production of short-chain alkanes
- (2013) Yong Jun Choi et al. NATURE
- Enumerating metabolic pathways for the production of heterologous target chemicals in chassis organisms
- (2012) Pablo Carbonell et al. BMC Systems Biology
- Computational tools and resources for metabolism-related property predictions. 1. Overview of publicly available (free and commercial) databases and software
- (2012) Megan L Peach et al. Future Medicinal Chemistry
- Mutations in Escherichia coli aceE and ribB Genes Allow Survival of Strains Defective in the First Step of the Isoprenoid Biosynthesis Pathway
- (2012) Jordi Perez-Gil et al. PLoS One
- Reconstruction and Evaluation of the Synthetic Bacterial MEP Pathway in Saccharomyces cerevisiae
- (2012) Siavash Partow et al. PLoS One
- Metabolite Profiling Identified Methylerythritol Cyclodiphosphate Efflux as a Limiting Step in Microbial Isoprenoid Production
- (2012) Kang Zhou et al. PLoS One
- Network Context and Selection in the Evolution to Enzyme Specificity
- (2012) H. Nam et al. SCIENCE
- Biocatalytic Promiscuity
- (2011) Maria Svedendahl Humble et al. EUROPEAN JOURNAL OF ORGANIC CHEMISTRY
- A Computational Approach To Design and Evaluate Enzymatic Reaction Pathways: Application to 1-Butanol Production from Pyruvate
- (2011) Di Wu et al. Journal of Chemical Information and Modeling
- Insights into Molecular Basis of Cytochrome P450 Inhibitory Promiscuity of Compounds
- (2011) Feixiong Cheng et al. Journal of Chemical Information and Modeling
- Probabilistic pathway construction
- (2011) Mona Yousofshahi et al. METABOLIC ENGINEERING
- Metabolic engineering of Escherichia coli for direct production of 1,4-butanediol
- (2011) Harry Yim et al. Nature Chemical Biology
- Open Babel: An open chemical toolbox
- (2011) Noel M O'Boyle et al. Journal of Cheminformatics
- Acetate accumulation through alternative metabolic pathways in ackA − pta − poxB − triple mutant in E. coli B (BL21)
- (2010) Je-Nie Phue et al. BIOTECHNOLOGY LETTERS
- Prediction of novel synthetic pathways for the production of desired chemicals
- (2010) Ayoun Cho et al. BMC Systems Biology
- Quantifying and Predicting the Promiscuity and Isoform Specificity of Small-Molecule Cytochrome P450 Inhibitors
- (2010) A. Nath et al. DRUG METABOLISM AND DISPOSITION
- Biosynthesis of Isoprenoids: Crystal Structure of the [4Fe–4S] Cluster Protein IspG
- (2010) Matthias Lee et al. JOURNAL OF MOLECULAR BIOLOGY
- High-throughput generation, optimization and analysis of genome-scale metabolic models
- (2010) Christopher S Henry et al. NATURE BIOTECHNOLOGY
- What is flux balance analysis?
- (2010) Jeffrey D Orth et al. NATURE BIOTECHNOLOGY
- BRENDA, the enzyme information system in 2011
- (2010) M. Scheer et al. NUCLEIC ACIDS RESEARCH
- SIMCOMP/SUBCOMP: chemical structure search servers for network analyses
- (2010) M. Hattori et al. NUCLEIC ACIDS RESEARCH
- Isoprenoid Pathway Optimization for Taxol Precursor Overproduction in Escherichia coli
- (2010) P. K. Ajikumar et al. SCIENCE
- OptForce: An Optimization Procedure for Identifying All Genetic Manipulations Leading to Targeted Overproductions
- (2010) Sridhar Ranganathan et al. PLoS Computational Biology
- Protein promiscuity and its implications for biotechnology
- (2009) Irene Nobeli et al. NATURE BIOTECHNOLOGY
- DESHARKY: automatic design of metabolic pathways for optimal cell growth
- (2008) Guillermo Rodrigo et al. BIOINFORMATICS
- Group Contribution Method for Thermodynamic Analysis of Complex Metabolic Networks
- (2008) Matthew D. Jankowski et al. BIOPHYSICAL JOURNAL
- Pybel: a Python wrapper for the OpenBabel cheminformatics toolkit
- (2008) Noel M O'Boyle et al. Chemistry Central Journal
- A Quantitative Index of Substrate Promiscuity†
- (2007) Abhinav Nath et al. BIOCHEMISTRY
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started