HMCan: a method for detecting chromatin modifications in cancer samples using ChIP-seq data
出版年份 2013 全文链接
标题
HMCan: a method for detecting chromatin modifications in cancer samples using ChIP-seq data
作者
关键词
-
出版物
BIOINFORMATICS
Volume 29, Issue 23, Pages 2979-2986
出版商
Oxford University Press (OUP)
发表日期
2013-09-11
DOI
10.1093/bioinformatics/btt524
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Nebula—a web-server for advanced ChIP-seq data analysis
- (2012) Valentina Boeva et al. BIOINFORMATICS
- Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration
- (2012) H. Thorvaldsdottir et al. BRIEFINGS IN BIOINFORMATICS
- Systematic evaluation of factors influencing ChIP-seq fidelity
- (2012) Yiwen Chen et al. NATURE METHODS
- ChIP–seq and beyond: new and improved methodologies to detect and characterize protein–DNA interactions
- (2012) Terrence S. Furey NATURE REVIEWS GENETICS
- Summarizing and correcting the GC content bias in high-throughput sequencing
- (2012) Yuval Benjamini et al. NUCLEIC ACIDS RESEARCH
- Long-range epigenetic silencing of chromosome 5q31 protocadherins is involved in early and late stages of colorectal tumorigenesis through modulation of oncogenic pathways
- (2012) A R Dallosso et al. ONCOGENE
- Genome-Wide Bovine H3K27me3 Modifications and the Regulatory Effects on Genes Expressions in Peripheral Blood Lymphocytes
- (2012) Yanghua He et al. PLoS One
- Functional Dissection of HOXD Cluster Genes in Regulation of Neuroblastoma Cell Proliferation and Differentiation
- (2012) Yunhong Zha et al. PLoS One
- Control-FREEC: a tool for assessing copy number and allelic content using next-generation sequencing data
- (2011) Valentina Boeva et al. BIOINFORMATICS
- Integrative genomics viewer
- (2011) James T Robinson et al. NATURE BIOTECHNOLOGY
- ChIP-seq analysis reveals distinct H3K27me3 profiles that correlate with transcriptional activity
- (2011) Matthew D. Young et al. NUCLEIC ACIDS RESEARCH
- A signal–noise model for significance analysis of ChIP-seq with negative control
- (2010) Han Xu et al. BIOINFORMATICS
- Control-free calling of copy number alterations in deep-sequencing data using GC-content normalization
- (2010) Valentina Boeva et al. BIOINFORMATICS
- HPeak: an HMM-based algorithm for defining read-enriched regions in ChIP-Seq data
- (2010) Zhaohui S Qin et al. BMC BIOINFORMATICS
- A Novel Epigenetic Phenotype Associated With the Most Aggressive Pathway of Bladder Tumor Progression
- (2010) Céline Vallot et al. JNCI-Journal of the National Cancer Institute
- Comprehensive analysis of the chromatin landscape in Drosophila melanogaster
- (2010) Peter V. Kharchenko et al. NATURE
- EpiChIP: gene-by-gene quantification of epigenetic modification levels
- (2010) Daniel Hebenstreit et al. NUCLEIC ACIDS RESEARCH
- Transcriptional repression of DLEC1 associates with the depth of tumor invasion in oral squamous cell carcinoma
- (2010) Wei-Hsuan Chan et al. ORAL ONCOLOGY
- Differential expression analysis for sequence count data
- (2010) Simon Anders et al. GENOME BIOLOGY
- A clustering approach for identification of enriched domains from histone modification ChIP-Seq data
- (2009) Chongzhi Zang et al. BIOINFORMATICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- DLEC1 is a functional 3p22.3 tumour suppressor silenced by promoter CpG methylation in colon and gastric cancers
- (2009) J Ying et al. BRITISH JOURNAL OF CANCER
- PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls
- (2009) Joel Rozowsky et al. NATURE BIOTECHNOLOGY
- Genome Alteration Print (GAP): a tool to visualize and mine complex cancer genomic profiles obtained by SNP arrays
- (2009) Tatiana Popova et al. GENOME BIOLOGY
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- An HMM approach to genome-wide identification of differential histone modification sites from ChIP-seq data
- (2008) Han Xu et al. BIOINFORMATICS
- FindPeaks 3.1: a tool for identifying areas of enrichment from massively parallel short-read sequencing technology
- (2008) A. P. Fejes et al. BIOINFORMATICS
- Agglomerative Epigenetic Aberrations Are a Common Event in Human Breast Cancer
- (2008) P. Novak et al. CANCER RESEARCH
- Design and analysis of ChIP-seq experiments for DNA-binding proteins
- (2008) Peter V Kharchenko et al. NATURE BIOTECHNOLOGY
- Substantial biases in ultra-short read data sets from high-throughput DNA sequencing
- (2008) J. C. Dohm et al. NUCLEIC ACIDS RESEARCH
- Genomewide Analysis of PRC1 and PRC2 Occupancy Identifies Two Classes of Bivalent Domains
- (2008) Manching Ku et al. PLoS Genetics
- Model-based Analysis of ChIP-Seq (MACS)
- (2008) Yong Zhang et al. GENOME BIOLOGY
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