A statistical framework for Illumina DNA methylation arrays

High-throughput assessment of CpG site methylation for distinguishing between HCV-cirrhosis and HCV-associated hepatocellular carcinoma

(2010) Kellie J. Archer et al.   MOLECULAR GENETICS AND GENOMICS

Principles and challenges of genome-wide DNA methylation analysis

(2010) Peter W. Laird   NATURE REVIEWS GENETICS

Hepatocellular Carcinoma Displays Distinct DNA Methylation Signatures with Potential as Clinical Predictors

(2010) Hector Hernandez-Vargas et al.   PLoS One

DNA Methylation Profiles of Ovarian Epithelial Carcinoma Tumors and Cell Lines

(2010) Sahar Houshdaran et al.   PLoS One

Statistical methods of background correction for Illumina BeadArray data

(2009) Yang Xie et al.   BIOINFORMATICS

Integrative clustering of multiple genomic data types using a joint latent variable model with application to breast and lung cancer subtype analysis

(2009) Ronglai Shen et al.   BIOINFORMATICS

Epigenetic profiling reveals etiologically distinct patterns of DNA methylation in head and neck squamous cell carcinoma

(2009) Carmen J. Marsit et al.   CARCINOGENESIS

Weighted model-based clustering for remote sensing image analysis

(2009) Joseph W. Richards et al.   COMPUTATIONAL GEOSCIENCES

Genome-wide screen of promoter methylation identifies novel markers in melanoma

(2009) Y. Koga et al.   GENOME RESEARCH

The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores

(2009) Rafael A Irizarry et al.   NATURE GENETICS

Considerations for the processing and analysis of GoldenGate-based two-colour Illumina platforms

(2009) AG Lynch et al.   STATISTICAL METHODS IN MEDICAL RESEARCH

Aging and Environmental Exposures Alter Tissue-Specific DNA Methylation Dependent upon CpG Island Context

(2009) Brock C. Christensen et al.   PLoS Genetics

On the necessity of different statistical treatment for Illumina BeadChip and Affymetrix GeneChip data and its significance for biological interpretation

(2008) Wing-Cheong Wong et al.   Biology Direct

Statistical issues in the analysis of Illumina data

(2008) Mark J Dunning et al.   BMC BIOINFORMATICS

Model-based clustering of DNA methylation array data: a recursive-partitioning algorithm for high-dimensional data arising as a mixture of beta distributions

(2008) E Andres Houseman et al.   BMC BIOINFORMATICS

Comprehensive high-throughput arrays for relative methylation (CHARM)

(2008) R. A. Irizarry et al.   GENOME RESEARCH

An integrated resource for genome-wide identification and analysis of human tissue-specific differentially methylated regions (tDMRs)

(2008) V. K. Rakyan et al.   GENOME RESEARCH

A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis

(2008) Thomas A Down et al.   NATURE BIOTECHNOLOGY

A study of the relationships between oligonucleotide properties and hybridization signal intensities from NimbleGen microarray datasets

(2008) Hairong Wei et al.   NUCLEIC ACIDS RESEARCH

Variable Selection for Model-Based High-Dimensional Clustering and Its Application to Microarray Data

(2007) Sijian Wang et al.   BIOMETRICS