Article
Chemistry, Multidisciplinary
Alison B. Altman, Alexandra D. Tamerius, Nathan Z. Koocher, Yue Meng, Chris J. Pickard, James P. S. Walsh, James M. Rondinelli, Steven D. Jacobsen, Danna E. Freedman
Summary: Incorporating bismuth into new materials can create emergent properties such as permanent magnetism, superconductivity, and nontrivial topology. By using pressure as a tunable synthetic vector, unexplored regions of phase space can be accessed to facilitate reactivity between elements that do not react under ambient conditions. The combined computational-experimental approach in high-pressure materials discovery provides a broader insight into the thermodynamic landscape and is efficient in capturing high-pressure reactivity.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
(2021)
Article
Biochemical Research Methods
Daniel J. VandenHeuvel, Christopher Drovandi, Matthew J. Simpson
Summary: This study introduces an efficient framework using Gaussian processes to discover mechanisms in cell invasion experiments and provides uncertainty quantification. The framework is computationally efficient and can be applied to other biological problems.
PLOS COMPUTATIONAL BIOLOGY
(2022)
Article
Computer Science, Artificial Intelligence
Azhar Iqbal Kashif Butt, Waheed Ahmad, Muhammad Rafiq, Naeed Ahmad, Muhammad Imran
Summary: In this study, a new deterministic SEQIHR model of the deadly Corona virus pandemic is extensively studied using nonlinear ordinary differential equations. The aim is to provide deep insight into the dynamics of the disease and design an optimal control strategy by utilizing preventive measures. Mathematical techniques are employed to demonstrate the positivity and boundedness of solutions, and numerical analysis is performed to observe the effectiveness of quarantine and hospitalization strategies.
EXPERT SYSTEMS WITH APPLICATIONS
(2023)
Review
Hematology
Kathryn G. Link, Michael T. Stobb, Dougald M. Monroe, Aaron L. Fogelson, Keith B. Neeves, Suzanne S. Sindi, Karin Leiderman
Summary: This review discusses the use of computationally driven methods to generate large synthetic patient data sets for studying the variability in bleeding frequency and severity in hemophilia A, and proposes a potential mechanism based on the findings from this approach.
ARTERIOSCLEROSIS THROMBOSIS AND VASCULAR BIOLOGY
(2021)
Article
Biochemical Research Methods
Andrew J. Bass, John D. Storey
Summary: This study extends the application of the optimal discovery procedure to RNA-sequencing studies, including static, longitudinal, independent sampling time-series, and independent sampling dose-response studies. The method demonstrates improved performance compared to other testing procedures, leading to the discovery of more differentially expressed genes and increased power for enrichment analysis.
Article
Automation & Control Systems
Mitchell Easley, Mohammad B. Shadmand, Haitham Abu-Rub
Summary: This article proposes an optimal current control technique for grid-interactive cascaded multilevel inverters interfaced with battery energy storage sources. The proposed control scheme utilizes model predictive control and a dynamic lookup matrix to achieve power balancing and minimum energy control.
IEEE TRANSACTIONS ON INDUSTRIAL ELECTRONICS
(2021)
Article
Statistics & Probability
Dong Xia, Ming Yuan, Cun-Hui Zhang
Summary: In this article, the author develops methods to estimate a low rank tensor from noisy observations to achieve statistical and computational efficiencies. The fundamental statistical limits of noisy tensor completion are characterized by establishing minimax optimal rates of convergence for estimating a kth order low rank tensor. Additionally, a polynomial-time computable estimating procedure is proposed based on power iteration and a second-order spectral initialization achieving optimal rates of convergence.
ANNALS OF STATISTICS
(2021)
Article
Chemistry, Physical
Krishna Chaitanya Pitike, Antonio Macias, Markus Eisenbach, Craig A. Bridges, Valentino R. Cooper
Summary: High entropy ceramics offer great flexibility for tailoring physical properties. This study focuses on the formation feasibility and properties of high entropy pyrochlore oxides. Through theoretical calculations and experimental synthesis, high purity high entropy pyrochlore oxides were obtained, providing guidance for the experimental synthesis of novel multicomponent ceramics.
CHEMISTRY OF MATERIALS
(2022)
Article
Multidisciplinary Sciences
Edward Kalkreuter, Kyle S. Bingham, Aaron M. Keeler, Andrew N. Lowell, Jennifer J. Schmidt, David H. Sherman, Gavin J. Williams
Summary: This study utilized molecular dynamics simulations to identify mutations influencing AT domain selectivity and exchanged structural motifs to obtain chimeric PKS modules with expanded substrate specificity.
NATURE COMMUNICATIONS
(2021)
Article
Biochemical Research Methods
Aditya Gorla, Brandon Jew, Luke Zhang, Jae Hoon Sul
Summary: The researchers introduced xGAP, an extensible Genome Analysis Pipeline, for analyzing DNA-seq data with high automation, scalability, and accuracy. The pipeline implements modified GATK best practices, allowing efficient parallel processing of data and achieving consistent, high-quality results across various environments.
Article
Chemistry, Physical
Mark Chaimovich, Aviel Chaimovich
Summary: RelRes is a novel multiscale simulation approach that accurately reproduces the structure and behavior of different nonpolar mixtures in state space. Implementing the RelRes algorithm in LAMMPS significantly improves computational efficiency and is applicable for studying systems governed by Lennard-Jones interactions.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION
(2021)
Article
Multidisciplinary Sciences
Ahmad H. Bokhari, Martin Berggren, Daniel Noreland, Eddie Wadbro
Summary: This study aims to reduce the computational time of simulating the average response for a given subwoofer design by proposing a hybrid 2D-3D model, which efficiently calculates the performance of different design layouts. The results show that the hybrid model is accurate and computationally efficient.
SCIENTIFIC REPORTS
(2021)
Article
Computer Science, Interdisciplinary Applications
Bernard Knueven, James Ostrowski, Anya Castillo, Jean-Paul Watson
Summary: In electricity markets, convex hull pricing offers a solution to the challenges posed by non-convex production offers, providing uniform prices while minimizing side payments. The computation of convex hull prices can be achieved through solving large-scale linear programs or the Lagrangian dual of non-convex scheduling problems, with the Benders decomposition approach offering a more efficient solution.
COMPUTERS & INDUSTRIAL ENGINEERING
(2022)
Article
Engineering, Manufacturing
Nishant K. Shakya, Srikant S. Padhee
Summary: Bent-twist coupling can be achieved by both asymmetric and symmetric laminate composites. The hygrothermal deformations in these composites can lead to dimensional instability and need to be eliminated. Two proposed generalized stacking sequences provide the required bend-twist coupling and have been optimized using analytical and numerical techniques. The optimized results show excellent agreement with conventional constrained numerical optimization results, and the proposed stacking sequence is more computationally efficient.
COMPOSITES PART A-APPLIED SCIENCE AND MANUFACTURING
(2023)
Article
Engineering, Multidisciplinary
Mahtab Uddin, M. Monir Uddin, Md. Abdul Hakim Khan
Summary: The article focuses on obtaining optimal control for unstable power system models and stabilizing them through a feedback stabilization process with sparsity-preserving techniques. A new method called the Rational Krylov Subspace Method (RKSM) is proposed for solving the Continuous-time Algebraic Riccati Equations (CAREs) derived from these models. Results from numerical simulations in MATLAB demonstrate the applicability and adaptability of the proposed techniques.
MATHEMATICAL PROBLEMS IN ENGINEERING
(2021)
Article
Biochemical Research Methods
Wei Hao, Minsun Song, John D. Storey
Article
Biochemical Research Methods
Alyssa C. Frazee, Andrew E. Jaffe, Ben Langmead, Jeffrey T. Leek
Article
Biochemical Research Methods
Prasad Patil, Pierre-Olivier Bachant-Winner, Benjamin Haibe-Kains, Jeffrey T. Leek
Article
Biochemical Research Methods
Andrew E. Jaffe, Thomas Hyde, Joel Kleinman, Daniel R. Weinbergern, Joshua G. Chenoweth, Ronald D. Mckay, Jeffrey T. Leek, Carlo Colantuoni
BMC BIOINFORMATICS
(2015)
Editorial Material
Multidisciplinary Sciences
Jeffrey T. Leek, Roger D. Peng
Letter
Biotechnology & Applied Microbiology
Alyssa C. Frazee, Geo Pertea, Andrew E. Jaffe, Ben Langmead, Steven L. Salzberg, Jeffrey T. Leek
NATURE BIOTECHNOLOGY
(2015)
Article
Biochemistry & Molecular Biology
David G. Robinson, Jean Y. Wang, John D. Storey
NUCLEIC ACIDS RESEARCH
(2015)
Editorial Material
Multidisciplinary Sciences
Jeffrey T. Leek, Roger D. Peng
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
(2015)
Editorial Material
Multidisciplinary Sciences
Jeffery T. Leek, Roger D. Peng
Article
Biochemical Research Methods
Alejandro Ochoa, John D. Storey, Manuel Llinas, Mona Singh
PLOS COMPUTATIONAL BIOLOGY
(2015)
Article
Genetics & Heredity
Prem Gopalan, Wei Hao, David M. Blei, John D. Storey
Article
Multidisciplinary Sciences
Sean R. Hackett, Vito R. T. Zanotelli, Wenxin Xu, Jonathan Goya, Junyoung O. Park, David H. Perlman, Patrick A. Gibney, David Botstein, John D. Storey, Joshua D. Rabinowitz
Article
Multidisciplinary Sciences
Heather J. Painter, Neo Christopher Chung, Aswathy Sebastian, Istvan Albert, John D. Storey, Manuel Llinas
NATURE COMMUNICATIONS
(2018)
Article
Biochemical Research Methods
Neo Christopher Chung, John D. Storey
Article
Medicine, Research & Experimental
Prasad Patil, Elizabeth Colantuoni, Jeffrey T. Leek, Michael Rosenblum
CONTEMPORARY CLINICAL TRIALS COMMUNICATIONS
(2016)