Dynamics of MDR Enterobacter cloacae outbreaks in a neonatal unit in Nepal: insights using wider sampling frames and next-generation sequencing

Outbreak of AmpC β-lactamase-hyper-producing Enterobacter cloacae in a neonatal intensive care unit in a French teaching hospital

(2014) Nathalie Pestourie et al.   AMERICAN JOURNAL OF INFECTION CONTROL

Spread of NDM-1-Producing Enterobacteriaceae in a Neonatal Intensive Care Unit in Istanbul, Turkey

(2014) L. Poirel et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Genome Sequencing of an Extended Series of NDM-Producing Klebsiella pneumoniae Isolates from Neonatal Infections in a Nepali Hospital Characterizes the Extent of Community- versus Hospital-Associated Transmission in an Endemic Setting

(2014) N. Stoesser et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

In SilicoDetection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing

(2014) Alessandra Carattoli et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

Multidrug resistant NDM-1 metallo-beta-lactamase producing Klebsiella pneumoniae sepsis outbreak in a neonatal intensive care unit in a tertiary care center at central India

(2014) Atul Khajuria et al.   Indian Journal of Pathology and Microbiology

Carbapenem-Resistant Klebsiella pneumoniae Producing New Delhi Metallo-β-Lactamase at an Acute Care Hospital, Colorado, 2012

(2014) Erin E. Epson et al.   INFECTION CONTROL AND HOSPITAL EPIDEMIOLOGY

Emergence of NDM-1-producing Enterobacteriaceae in Porto Alegre, Brazil

(2014) Franciéli P. Rozales et al.   INTERNATIONAL JOURNAL OF INFECTIOUS DISEASES

Comparison of phenotypic methods for the detection of carbapenem non-susceptible Enterobacteriaceae

(2014) Andrea Bartolini et al.   Gut Pathogens

Complete Sequences of Two Plasmids in ablaNDM-1-Positive Klebsiella oxytoca Isolate from Taiwan

(2013) Tzu-Wen Huang et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Predicting antimicrobial susceptibilities for Escherichia coli and Klebsiella pneumoniae isolates using whole genomic sequence data

(2013) N. Stoesser et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Global spread of antibiotic resistance: the example of New Delhi metallo-β-lactamase (NDM)-mediated carbapenem resistance

(2013) Alan P. Johnson et al.   JOURNAL OF MEDICAL MICROBIOLOGY

Diverse Sources of C. difficile Infection Identified on Whole-Genome Sequencing

(2013) David W. Eyre et al.   NEW ENGLAND JOURNAL OF MEDICINE

Multilocus Sequence Typing (MLST) for Characterization of Enterobacter cloacae

(2013) Tohru Miyoshi-Akiyama et al.   PLoS One

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

Outbreak of multidrug-resistant CTX-M-15-producing Enterobacter cloacae in a neonatal intensive care unit

(2012) J. Oteo et al.   JOURNAL OF MEDICAL MICROBIOLOGY

Transmission of imipenem resistance determinants during the course of an outbreak of NDM-1 Escherichia coli in a sick newborn care unit

(2011) Subhasree Roy et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Prevalence of faecal carriage of Enterobacteriaceae with NDM-1 carbapenemase at military hospitals in Pakistan, and evaluation of two chromogenic media

(2011) J. D. Perry et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Airborne hydrogen peroxide for disinfection of the hospital environment and infection control: a systematic review

(2011) M.E. Falagas et al.   JOURNAL OF HOSPITAL INFECTION

Dissemination of NDM-1 positive bacteria in the New Delhi environment and its implications for human health: an environmental point prevalence study

(2011) Timothy R Walsh et al.   LANCET INFECTIOUS DISEASES

Characterization of a New Metallo- -Lactamase Gene, blaNDM-1, and a Novel Erythromycin Esterase Gene Carried on a Unique Genetic Structure in Klebsiella pneumoniae Sequence Type 14 from India

(2009) D. Yong et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Outbreak of Serratia marcescens in a neonatal intensive care unit: contaminated unmedicated liquid soap and risk factors

(2009) S. Buffet-Bataillon et al.   JOURNAL OF HOSPITAL INFECTION

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Investigation of an outbreak of Enterobacter cloacae in a neonatal unit and review of the literature

(2008) M. Dalben et al.   JOURNAL OF HOSPITAL INFECTION

Federal Funding for the Study of Antimicrobial Resistance in Nosocomial Pathogens: No ESKAPE

(2008) Louis B. Rice   JOURNAL OF INFECTIOUS DISEASES