Metagenomic resolution of microbial functions in deep-sea hydrothermal plumes across the Eastern Lau Spreading Center
出版年份 2015 全文链接
标题
Metagenomic resolution of microbial functions in deep-sea hydrothermal plumes across the Eastern Lau Spreading Center
作者
关键词
-
出版物
ISME Journal
Volume 10, Issue 1, Pages 225-239
出版商
Springer Nature
发表日期
2015-06-05
DOI
10.1038/ismej.2015.81
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- InterProScan 5: genome-scale protein function classification
- (2014) P. Jones et al. BIOINFORMATICS
- Single-cell enabled comparative genomics of a deep ocean SAR11 bathytype
- (2014) J Cameron Thrash et al. ISME Journal
- Spatially resolved sampling reveals dynamic microbial communities in rising hydrothermal plumes across a back-arc basin
- (2014) Cody S Sheik et al. ISME Journal
- Sulfur Oxidation Genes in Diverse Deep-Sea Viruses
- (2014) K. Anantharaman et al. SCIENCE
- Metabolic flexibility of enigmatic SAR324 revealed through metagenomics and metatranscriptomics
- (2013) Cody S. Sheik et al. ENVIRONMENTAL MICROBIOLOGY
- Novel hydrocarbon monooxygenase genes in the metatranscriptome of a natural deep-sea hydrocarbon plume
- (2013) Meng Li et al. ENVIRONMENTAL MICROBIOLOGY
- Community transcriptomic assembly reveals microbes that contribute to deep-sea carbon and nitrogen cycling
- (2013) Brett J Baker et al. ISME Journal
- Transcriptional response of bathypelagic marine bacterioplankton to the Deepwater Horizon oil spill
- (2013) Adam R Rivers et al. ISME Journal
- Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes
- (2013) Mads Albertsen et al. NATURE BIOTECHNOLOGY
- Small Genomes and Sparse Metabolisms of Sediment-Associated Bacteria from Four Candidate Phyla
- (2013) R. S. Kantor et al. mBio
- The human gut and groundwater harbor non-photosynthetic bacteria belonging to a new candidate phylum sibling to Cyanobacteria
- (2013) Sara C Di Rienzi et al. eLife
- The microbiology of deep-sea hydrothermal vent plumes: ecological and biogeographic linkages to seafloor and water column habitats
- (2013) Gregory J. Dick et al. Frontiers in Microbiology
- Low Temperature Geomicrobiology Follows Host Rock Composition Along a Geochemical Gradient in Lau Basin
- (2013) Jason B. Sylvan et al. Frontiers in Microbiology
- The Genome of Nitrospina gracilis Illuminates the Metabolism and Evolution of the Major Marine Nitrite Oxidizer
- (2013) Sebastian Lücker et al. Frontiers in Microbiology
- IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth
- (2012) Y. Peng et al. BIOINFORMATICS
- Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration
- (2012) H. Thorvaldsdottir et al. BRIEFINGS IN BIOINFORMATICS
- Inter-field variability in the microbial communities of hydrothermal vent deposits from a back-arc basin
- (2012) G. E. FLORES et al. Geobiology
- Time-series analysis of two hydrothermal plumes at 9°50′N East Pacific Rise reveals distinct, heterogeneous bacterial populations
- (2012) J. B. SYLVAN et al. Geobiology
- Sulfur, sulfides, oxides and organic matter aggregated in submarine hydrothermal plumes at 9°50′N East Pacific Rise
- (2012) J.A. Breier et al. GEOCHIMICA ET COSMOCHIMICA ACTA
- The metatranscriptome of a deep-sea hydrothermal plume is dominated by water column methanotrophs and lithotrophs
- (2012) Ryan A Lesniewski et al. ISME Journal
- Diversity and population structure of Marine Group A bacteria in the Northeast subarctic Pacific Ocean
- (2012) Elke Allers et al. ISME Journal
- Genome-enabled transcriptomics reveals archaeal populations that drive nitrification in a deep-sea hydrothermal plume
- (2012) Brett J Baker et al. ISME Journal
- MetaVelvet: an extension of Velvet assembler to de novo metagenome assembly from short sequence reads
- (2012) Toshiaki Namiki et al. NUCLEIC ACIDS RESEARCH
- Evidence for hydrogen oxidation and metabolic plasticity in widespread deep-sea sulfur-oxidizing bacteria
- (2012) K. Anantharaman et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Genomic Potential of Marinobacter aquaeolei, a Biogeochemical “Opportunitroph”
- (2011) Esther Singer et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Identification and removal of ribosomal RNA sequences from metatranscriptomes
- (2011) Robert Schmieder et al. BIOINFORMATICS
- Facultative methanotrophy: false leads, true results, and suggestions for future research
- (2011) Jeremy D. Semrau et al. FEMS MICROBIOLOGY LETTERS
- Community genomic analysis of an extremely acidophilic sulfur-oxidizing biofilm
- (2011) Daniel S Jones et al. ISME Journal
- Microbial oceanography of the dark ocean's pelagic realm
- (2011) Javier Arístegui et al. LIMNOLOGY AND OCEANOGRAPHY
- Hydrogen is an energy source for hydrothermal vent symbioses
- (2011) Jillian M. Petersen et al. NATURE
- A Persistent Oxygen Anomaly Reveals the Fate of Spilled Methane in the Deep Gulf of Mexico
- (2011) J. D. Kessler et al. SCIENCE
- Potential for Chemolithoautotrophy Among Ubiquitous Bacteria Lineages in the Dark Ocean
- (2011) B. K. Swan et al. SCIENCE
- Sulfur Metabolisms in Epsilon- and Gamma-Proteobacteria in Deep-Sea Hydrothermal Fields
- (2011) Masahiro Yamamoto et al. Frontiers in Microbiology
- Major contribution of autotrophy to microbial carbon cycling in the deep North Atlantic’s interior
- (2010) Thomas Reinthaler et al. DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY
- Microbial diversity and biogeochemistry of the Guaymas Basin deep-sea hydrothermal plume
- (2010) Gregory J. Dick et al. ENVIRONMENTAL MICROBIOLOGY
- Chemistry of hot springs along the Eastern Lau Spreading Center
- (2010) Michael J. Mottl et al. GEOCHIMICA ET COSMOCHIMICA ACTA
- Distributions of putative aerobic methanotrophs in diverse pelagic marine environments
- (2010) Patricia L Tavormina et al. ISME Journal
- Hydrothermal contribution to the oceanic dissolved iron inventory
- (2010) Alessandro Tagliabue et al. Nature Geoscience
- Diverse styles of submarine venting on the ultraslow spreading Mid-Cayman Rise
- (2010) C. R. German et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A Nitrospira metagenome illuminates the physiology and evolution of globally important nitrite-oxidizing bacteria
- (2010) S. Lucker et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A Cryptic Sulfur Cycle in Oxygen-Minimum-Zone Waters off the Chilean Coast
- (2010) D. E. Canfield et al. SCIENCE
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- A suspended-particle rosette multi-sampler for discrete biogeochemical sampling in low-particle-density waters
- (2009) J.A. Breier et al. DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS
- Enzymatic microbial Mn(II) oxidation and Mn biooxide production in the Guaymas Basin deep-sea hydrothermal plume
- (2009) Gregory J. Dick et al. GEOCHIMICA ET COSMOCHIMICA ACTA
- Preservation of iron(II) by carbon-rich matrices in a hydrothermal plume
- (2009) Brandy M. Toner et al. Nature Geoscience
- Metagenome of a Versatile Chemolithoautotroph from Expanding Oceanic Dead Zones
- (2009) D. A. Walsh et al. SCIENCE
- Community-wide analysis of microbial genome sequence signatures
- (2009) Gregory J Dick et al. GENOME BIOLOGY
- Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
- (2008) D. R. Zerbino et al. GENOME RESEARCH
- Variable morphologic expression of volcanic, tectonic, and hydrothermal processes at six hydrothermal vent fields in the Lau back-arc basin
- (2008) Vicki Lynn Ferrini et al. GEOCHEMISTRY GEOPHYSICS GEOSYSTEMS
- Microbial ammonia oxidation and enhanced nitrogen cycling in the Endeavour hydrothermal plume
- (2008) Phyllis Lam et al. GEOCHIMICA ET COSMOCHIMICA ACTA
- Resistance, resilience, and redundancy in microbial communities
- (2008) S. D. Allison et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started