Towards biome-specific analysis of meta-omics data

Microbiology Meets Big Data: The Case of Gut Microbiota–Derived Trimethylamine

(2015) Gwen Falony et al.   Annual Review of Microbiology

Structure and function of the global ocean microbiome

(2015) S. Sunagawa et al.   SCIENCE

Potential of fecal microbiota for early-stage detection of colorectal cancer

(2014) G. Zeller et al.   Molecular Systems Biology

FOAM (Functional Ontology Assignments for Metagenomes): a Hidden Markov Model (HMM) database with environmental focus

(2014) Emmanuel Prestat et al.   NUCLEIC ACIDS RESEARCH

Richness of human gut microbiome correlates with metabolic markers

(2013) Emmanuelle Le Chatelier et al.   NATURE

Data, information, knowledge and principle: back to metabolism in KEGG

(2013) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Integrated Metagenomics/Metaproteomics Reveals Human Host-Microbiota Signatures of Crohn's Disease

(2012) Alison R. Erickson et al.   PLoS One

Intestinal microbiota in human health and disease: the impact of probiotics

(2011) Jacoline Gerritsen et al.   Genes and Nutrition

Characterization of Inflammatory Bowel Disease With Urinary Metabolic Profiling

(2009) Horace R T Williams et al.   AMERICAN JOURNAL OF GASTROENTEROLOGY

A Parsimony Approach to Biological Pathway Reconstruction/Inference for Genomes and Metagenomes

(2009) Yuzhen Ye et al.   PLoS Computational Biology