Phylogenetic congruence and ecological coherence in terrestrial Thaumarchaeota

Characterisation of terrestrial acidophilic archaeal ammonia oxidisers and their inhibition and stimulation by organic compounds

(2014) Laura E. Lehtovirta-Morley et al.   FEMS MICROBIOLOGY ECOLOGY

Influence of soil properties on archaeal diversity and distribution in the McMurdo Dry Valleys, Antarctica

(2014) Ingrid Richter et al.   FEMS MICROBIOLOGY ECOLOGY

Interactions between Thaumarchaea, Nitrospira and methanotrophs modulate autotrophic nitrification in volcanic grassland soil

(2014) Anne Daebeler et al.   ISME Journal

pH as a Driver for Ammonia-Oxidizing Archaea in Forest Soils

(2014) Barbara Stempfhuber et al.   MICROBIAL ECOLOGY

Bayesian Analysis of Congruence of Core Genes in Prochlorococcus and Synechococcus and Implications on Horizontal Gene Transfer

(2014) Nicholas J. Matzke et al.   PLoS One

Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible

(2014) Paul J. McMurdie et al.   PLoS Computational Biology

Intragenomic Heterogeneity of 16S rRNA Genes Causes Overestimation of Prokaryotic Diversity

(2013) Dong-Lei Sun et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Ecological coherence of diversity patterns derived from classical fingerprinting and Next Generation Sequencing techniques

(2013) Angélique Gobet et al.   ENVIRONMENTAL MICROBIOLOGY

Nitrification rates in Arctic soils are associated with functionally distinct populations of ammonia-oxidizing archaea

(2013) Ricardo J Eloy Alves et al.   ISME Journal

PACo: A Novel Procrustes Application to Cophylogenetic Analysis

(2013) Juan Antonio Balbuena et al.   PLoS One

Physiology and Diversity of Ammonia-Oxidizing Archaea

(2012) David A. Stahl et al.   Annual Review of Microbiology

The genome of the ammonia-oxidizingCandidatusNitrososphaera gargensis: insights into metabolic versatility and environmental adaptations

(2012) Anja Spang et al.   ENVIRONMENTAL MICROBIOLOGY

A NEW BAYESIAN METHOD FOR FITTING EVOLUTIONARY MODELS TO COMPARATIVE DATA WITH INTRASPECIFIC VARIATION

(2012) Liam J. Revell et al.   EVOLUTION

Lineage-dependent ecological coherence in bacteria

(2012) Alexander F. Koeppel et al.   FEMS MICROBIOLOGY ECOLOGY

Nitrification of archaeal ammonia oxidizers in acid soils is supported by hydrolysis of urea

(2012) Lu Lu et al.   ISME Journal

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

Rainfall-induced carbon dioxide pulses result from sequential resuscitation of phylogenetically clustered microbial groups

(2012) S. A. Placella et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Archaeal and bacterial ammonia-oxidisers in soil: the quest for niche specialisation and differentiation

(2012) James I. Prosser et al.   TRENDS IN MICROBIOLOGY

Drivers of archaeal ammonia-oxidizing communities in soil

(2012) Kateryna Zhalnina et al.   Frontiers in Microbiology

Global Biodiversity of Aquatic Ammonia-Oxidizing Archaea is Partitioned by Habitat

(2012) Steven J. Biller et al.   Frontiers in Microbiology

The Thaumarchaeota: an emerging view of their phylogeny and ecophysiology

(2011) Michael Pester et al.   CURRENT OPINION IN MICROBIOLOGY

amoA-based consensus phylogeny of ammonia-oxidizing archaea and deep sequencing of amoA genes from soils of four different geographic regions

(2011) Michael Pester et al.   ENVIRONMENTAL MICROBIOLOGY

Let Them Fall Where They May: Congruence Analysis in Massive Phylogenetically Messy Data Sets

(2011) J. W. Leigh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Adaptation to Environmental Temperature Is a Major Determinant of Molecular Evolutionary Rates in Archaea

(2011) M. Groussin et al.   MOLECULAR BIOLOGY AND EVOLUTION

Nitrososphaera viennensis, an ammonia oxidizing archaeon from soil

(2011) M. Tourna et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Niche specialization of terrestrial archaeal ammonia oxidizers

(2011) C. Gubry-Rangin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Diversity and abundance of ammonia-oxidizing archaea and bacteria in polluted mangrove sediment

(2011) Huiluo Cao et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Thaumarchaeal Ammonia Oxidation in an Acidic Forest Peat Soil Is Not Influenced by Ammonium Amendment

(2010) N. Stopnisek et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

RDP3: a flexible and fast computer program for analyzing recombination

(2010) D. P. Martin et al.   BIOINFORMATICS

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Archaea rather than bacteria control nitrification in two agricultural acidic soils

(2010) Cécile Gubry-Rangin et al.   FEMS MICROBIOLOGY ECOLOGY

Nitrifiers and denitrifiers respond rapidly to changed moisture and increasing temperature in a pristine forest soil

(2010) Ute Szukics et al.   FEMS MICROBIOLOGY ECOLOGY

Examining the global distribution of dominant archaeal populations in soil

(2010) Scott T Bates et al.   ISME Journal

The ecological coherence of high bacterial taxonomic ranks

(2010) Laurent Philippot et al.   NATURE REVIEWS MICROBIOLOGY

Soil pH regulates the abundance and diversity of Group 1.1c Crenarchaeota

(2009) Laura E. Lehtovirta et al.   FEMS MICROBIOLOGY ECOLOGY

Growth of ammonia-oxidizing archaea in soil microcosms is inhibited by acetylene

(2009) Pierre Offre et al.   FEMS MICROBIOLOGY ECOLOGY

Biogeography of soil archaea and bacteria along a steep precipitation gradient

(2009) Roey Angel et al.   ISME Journal

Bacteria, not archaea, restore nitrification in a zinc-contaminated soil

(2009) Jelle Mertens et al.   ISME Journal

A Permutation Test of Host-Parasite Cospeciation

(2009) K. Hommola et al.   MOLECULAR BIOLOGY AND EVOLUTION

The influence of soil pH on the diversity, abundance and transcriptional activity of ammonia oxidizing archaea and bacteria

(2008) Graeme W. Nicol et al.   ENVIRONMENTAL MICROBIOLOGY

Growth, activity and temperature responses of ammonia-oxidizing archaea and bacteria in soil microcosms

(2008) Maria Tourna et al.   ENVIRONMENTAL MICROBIOLOGY

Influence of temperature and soil water content on bacterial, archaeal and denitrifying microbial communities in drained fen grassland soil microcosms

(2008) Blaž Stres et al.   FEMS MICROBIOLOGY ECOLOGY

Mesophilic crenarchaeota: proposal for a third archaeal phylum, the Thaumarchaeota

(2008) Céline Brochier-Armanet et al.   NATURE REVIEWS MICROBIOLOGY