The genome of the ammonia-oxidizingCandidatusNitrososphaera gargensis: insights into metabolic versatility and environmental adaptations

Ecophysiological Characterization of Ammonia-Oxidizing Archaea and Bacteria from Freshwater

(2012) Elizabeth French et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Cultivation of a highly enriched ammonia-oxidizing archaeon of thaumarchaeotal group I.1b from an agricultural soil

(2012) Jong-Geol Kim et al.   ENVIRONMENTAL MICROBIOLOGY

Metatranscriptomics of the marine sponge Geodia barretti: tackling phylogeny and function of its microbial community

(2012) Regina Radax et al.   ENVIRONMENTAL MICROBIOLOGY

Genome Sequence of "Candidatus Nitrosopumilus salaria" BD31, an Ammonia-Oxidizing Archaeon from the San Francisco Bay Estuary

(2012) A. C. Mosier et al.   JOURNAL OF BACTERIOLOGY

Genome Sequence of "Candidatus Nitrosoarchaeum limnia" BG20, a Low-Salinity Ammonia-Oxidizing Archaeon from the San Francisco Bay Estuary

(2012) A. C. Mosier et al.   JOURNAL OF BACTERIOLOGY

Ecophysiology of an Ammonia-Oxidizing Archaeon Adapted to Low-Salinity Habitats

(2012) Annika C. Mosier et al.   MICROBIAL ECOLOGY

Identification and characterization of a bacterial hydrosulphide ion channel

(2012) Bryan K. Czyzewski et al.   NATURE

Metagenomic Analysis of Ammonia-Oxidizing Archaea Affiliated with the Soil Group

(2012) Rita Bartossek et al.   Frontiers in Microbiology

Ecological Aspects of the Distribution of Different Autotrophic CO2Fixation Pathways

(2011) Ivan A. Berg   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Enrichment and Characterization of an Autotrophic Ammonia-Oxidizing Archaeon of Mesophilic Crenarchaeal Group I.1a from an Agricultural Soil

(2011) Man-Young Jung et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Assembly and function of the archaeal flagellum

(2011) Abhrajyoti Ghosh et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

A thaumarchaeal provirus testifies for an ancient association of tailed viruses with archaea

(2011) Mart Krupovic et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Clustered regularly interspaced short palindromic repeats (CRISPRs): the hallmark of an ingenious antiviral defense mechanism in prokaryotes

(2011) Sinan Al-Attar et al.   BIOLOGICAL CHEMISTRY

Archaeal type IV pilus-like structures—evolutionarily conserved prokaryotic surface organelles

(2011) Mecky Pohlschroder et al.   CURRENT OPINION IN MICROBIOLOGY

The Thaumarchaeota: an emerging view of their phylogeny and ecophysiology

(2011) Michael Pester et al.   CURRENT OPINION IN MICROBIOLOGY

amoA-based consensus phylogeny of ammonia-oxidizing archaea and deep sequencing of amoA genes from soils of four different geographic regions

(2011) Michael Pester et al.   ENVIRONMENTAL MICROBIOLOGY

Microbial metatranscriptomics in a permanent marine oxygen minimum zone

(2011) Frank J. Stewart et al.   ENVIRONMENTAL MICROBIOLOGY

The bindosome is a structural component of the Sulfolobus solfataricus cell envelope

(2011) Benham Zolghadr et al.   EXTREMOPHILES

Spotlight on the Thaumarchaeota

(2011) C Brochier-Armanet et al.   ISME Journal

Ammonia concentration determines differential growth of ammonia-oxidising archaea and bacteria in soil microcosms

(2011) Daniel T Verhamme et al.   ISME Journal

Genome Sequence of an Ammonia-Oxidizing Soil Archaeon, "Candidatus Nitrosoarchaeum koreensis" MY1

(2011) B. K. Kim et al.   JOURNAL OF BACTERIOLOGY

The Evolution of Respiratory Chain Complex I from a Smaller Last Common Ancestor Consisting of 11 Protein Subunits

(2011) Vamsi K. Moparthi et al.   JOURNAL OF MOLECULAR EVOLUTION

UV-inducible DNA exchange in hyperthermophilic archaea mediated by type IV pili

(2011) Małgorzata Ajon et al.   MOLECULAR MICROBIOLOGY

Niche adaptation by expansion and reprogramming of general transcription factors

(2011) S. Turkarslan et al.   Molecular Systems Biology

A plastidial sodium-dependent pyruvate transporter

(2011) Tsuyoshi Furumoto et al.   NATURE

Evolution and classification of the CRISPR–Cas systems

(2011) Kira S. Makarova et al.   NATURE REVIEWS MICROBIOLOGY

NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy

(2011) K. D. Pruitt et al.   NUCLEIC ACIDS RESEARCH

Genome of a Low-Salinity Ammonia-Oxidizing Archaeon Determined by Single-Cell and Metagenomic Analysis

(2011) Paul C. Blainey et al.   PLoS One

Cultivation of an obligate acidophilic ammonia oxidizer from a nitrifying acid soil

(2011) L. E. Lehtovirta-Morley et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Thaumarchaeotes abundant in refinery nitrifying sludges express amoA but are not obligate autotrophic ammonia oxidizers

(2011) M. Mussmann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Nitrososphaera viennensis, an ammonia oxidizing archaeon from soil

(2011) M. Tourna et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Niche specialization of terrestrial archaeal ammonia oxidizers

(2011) C. Gubry-Rangin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Synthesis, Production, and Biotechnological Applications of Exopolysaccharides and Polyhydroxyalkanoates by Archaea

(2011) Annarita Poli et al.   ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL

Alternative Pathways of Carbon Dioxide Fixation: Insights into the Early Evolution of Life?

(2010) Georg Fuchs   Annual Review of Microbiology

Wide Distribution among Halophilic Archaea of a Novel Polyhydroxyalkanoate Synthase Subtype with Homology to Bacterial Type III Synthases

(2010) J. Han et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Sodium-translocating NADH:quinone oxidoreductase as a redox-driven ion pump

(2010) Michael I. Verkhovsky et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

A low-polynomial algorithm for assembling clusters of orthologous groups from intergenomic symmetric best matches

(2010) David M. Kristensen et al.   BIOINFORMATICS

Homologues of nitrite reductases in ammonia-oxidizing archaea: diversity and genomic context

(2010) Rita Bartossek et al.   ENVIRONMENTAL MICROBIOLOGY

Diversity, biological roles and biosynthetic pathways for sugar-glycerate containing compatible solutes in bacteria and archaea

(2010) Nuno Empadinhas et al.   ENVIRONMENTAL MICROBIOLOGY

Metatranscriptomic analysis of ammonia-oxidizing organisms in an estuarine bacterioplankton assemblage

(2010) James T Hollibaugh et al.   ISME Journal

Labeling and Enzyme Studies of the Central Carbon Metabolism in Metallosphaera sedula

(2010) S. Estelmann et al.   JOURNAL OF BACTERIOLOGY

Unexpected Abundance of Coenzyme F420-Dependent Enzymes in Mycobacterium tuberculosis and Other Actinobacteria

(2010) J. D. Selengut et al.   JOURNAL OF BACTERIOLOGY

Glucose 6-Phosphate Accumulation in Mycobacteria

(2010) Mohammad Rubayet Hasan et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The P-Type ATPase Superfamily

(2010) Henry Chan et al.   JOURNAL OF MOLECULAR MICROBIOLOGY AND BIOTECHNOLOGY

UV-inducible cellular aggregation of the hyperthermophilic archaeon Sulfolobus solfataricus is mediated by pili formation

(2010) Sabrina Fröls et al.   MOLECULAR MICROBIOLOGY

Fructose 1,6-bisphosphate aldolase/phosphatase may be an ancestral gluconeogenic enzyme

(2010) Rafael F. Say et al.   NATURE

Autotrophic carbon fixation in archaea

(2010) Ivan A. Berg et al.   NATURE REVIEWS MICROBIOLOGY

GenBank

(2010) D. A. Benson et al.   NUCLEIC ACIDS RESEARCH

Insights into the evolution of Archaea and eukaryotic protein modifier systems revealed by the genome of a novel archaeal group

(2010) Takuro Nunoura et al.   NUCLEIC ACIDS RESEARCH

A new bioinformatics analysis tools framework at EMBL-EBI

(2010) M. Goujon et al.   NUCLEIC ACIDS RESEARCH

A Nitrospira metagenome illuminates the physiology and evolution of globally important nitrite-oxidizing bacteria

(2010) S. Lucker et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea

(2010) C. B. Walker et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

CRISPR/Cas, the Immune System of Bacteria and Archaea

(2010) P. Horvath et al.   SCIENCE

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Distinct gene set in two different lineages of ammonia-oxidizing archaea supports the phylum Thaumarchaeota

(2010) Anja Spang et al.   TRENDS IN MICROBIOLOGY

FT-Raman investigation of biodegradable polymers: Poly(3-hydroxybutyrate) and poly(3-hydroxybutyrate-co-3-hydroxyvalerate)

(2010) Celly M.S. Izumi et al.   VIBRATIONAL SPECTROSCOPY

Shaping the Archaeal Cell Envelope

(2010) Albert F. Ellen et al.   ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL

Rhizobium sp. Strain NGR234 Possesses a Remarkable Number of Secretion Systems

(2009) C. Schmeisser et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Chaperones and protein folding in the archaea

(2009) Andrew T. Large et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Bacterial Polyhydroxyalkanoate Granules: Biogenesis, Structure, and Potential Use as Nano-/Micro-Beads in Biotechnological and Biomedical Applications

(2009) Katrin Grage et al.   BIOMACROMOLECULES

Diversity of archaeal type IV pilin-like structures

(2009) Sonja-Verena Albers et al.   EXTREMOPHILES

Crenarchaeol dominates the membrane lipids of Candidatus Nitrososphaera gargensis, a thermophilic Group I.1b Archaeon

(2009) Angela Pitcher et al.   ISME Journal

Study of the distribution of autotrophic CO2 fixation cycles in Crenarchaeota

(2009) I. A. Berg et al.   MICROBIOLOGY-SGM

Crystal structure of a bacterial homologue of the kidney urea transporter

(2009) Elena J. Levin et al.   NATURE

Ammonia oxidation kinetics determine niche separation of nitrifying Archaea and Bacteria

(2009) Willm Martens-Habbena et al.   NATURE

PROSITE, a protein domain database for functional characterization and annotation

(2009) Christian J. A. Sigrist et al.   NUCLEIC ACIDS RESEARCH

SIMAP—a comprehensive database of pre-calculated protein sequence similarities, domains, annotations and clusters

(2009) Thomas Rattei et al.   NUCLEIC ACIDS RESEARCH

Archaeal eukaryote-like Orc1/Cdc6 initiators physically interact with DNA polymerase B1 and regulate its functions

(2009) L. Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Relative CO2/NH3 selectivities of AQP1, AQP4, AQP5, AmtB, and RhAG

(2009) R. Musa-Aziz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Conversion of NO2 to NO by reduced coenzyme F420 protects mycobacteria from nitrosative damage

(2009) E. Purwantini et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

MicroScope: a platform for microbial genome annotation and comparative genomics

(2009) D. Vallenet et al.   Database-The Journal of Biological Databases and Curation

Monitoring Poly(3-hydroxybutyrate) Production inCupriavidus necatorDSM 428 (H16) with Raman Spectroscopy

(2008) Joke De Gelder et al.   ANALYTICAL CHEMISTRY

Type IV pili: paradoxes in form and function

(2008) Lisa Craig et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Cultivation of a thermophilic ammonia oxidizing archaeon synthesizing crenarchaeol

(2008) José R. de la Torre et al.   ENVIRONMENTAL MICROBIOLOGY

Genetic and Biochemical Characterization of the Poly(3-Hydroxybutyrate-co-3-Hydroxyvalerate) Synthase in Haloferax mediterranei

(2008) Q. Lu et al.   JOURNAL OF BACTERIOLOGY

Mesophilic crenarchaeota: proposal for a third archaeal phylum, the Thaumarchaeota

(2008) Céline Brochier-Armanet et al.   NATURE REVIEWS MICROBIOLOGY

Petabyte-scale innovations at the European Nucleotide Archive

(2008) G. Cochrane et al.   NUCLEIC ACIDS RESEARCH

The Transporter Classification Database: recent advances

(2008) M. H. Saier et al.   NUCLEIC ACIDS RESEARCH

HAMAP: a database of completely sequenced microbial proteome sets and manually curated microbial protein families in UniProtKB/Swiss-Prot

(2008) T. Lima et al.   NUCLEIC ACIDS RESEARCH

InterPro: the integrative protein signature database

(2008) S. Hunter et al.   NUCLEIC ACIDS RESEARCH

A moderately thermophilic ammonia-oxidizing crenarchaeote from a hot spring

(2008) R. Hatzenpichler et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Nitrifier genomics and evolution of the nitrogen cycle

(2007) Martin G. Klotz et al.   FEMS MICROBIOLOGY LETTERS

CRISPR — a widespread system that provides acquired resistance against phages in bacteria and archaea

(2007) Rotem Sorek et al.   NATURE REVIEWS MICROBIOLOGY