Seed-Development Programs: A Systems Biology–Based Comparison Between Dicots and Monocots

Genome-Enabled Insights into Legume Biology

(2012) Nevin D. Young et al.   Annual Review of Plant Biology

Epigenetic Mechanisms Underlying Genomic Imprinting in Plants

(2012) Claudia Köhler et al.   Annual Review of Plant Biology

Whole Genome Profiling provides a robust framework for physical mapping and sequencing in the highly complex and repetitive wheat genome

(2012) Romain Philippe et al.   BMC GENOMICS

Mechanism and Enzymatic Contribution to In Vitro Test Method of Digestion for Maize Starches Differing in Amylose Content

(2012) Lauren R. Brewer et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Insights into metabolic efficiency from flux analysis

(2012) Xuewen Chen et al.   JOURNAL OF EXPERIMENTAL BOTANY

LASSO modeling of the Arabidopsis thaliana seed/seedling transcriptome: a model case for detection of novel mucilage and pectin metabolism genes

(2012) Aleksandar Vasilevski et al.   Molecular BioSystems

CORNET 2.0: integrating plant coexpression, protein-protein interactions, regulatory interactions, gene associations and functional annotations

(2012) Stefanie De Bodt et al.   NEW PHYTOLOGIST

Toward the identification and regulation of the Arabidopsis thaliana ABI3 regulon

(2012) Gudrun Mönke et al.   NUCLEIC ACIDS RESEARCH

Plant Imprinted Genes Identified by Genome-wide Approaches and Their Regulatory Mechanisms

(2012) Y. Ikeda   PLANT AND CELL PHYSIOLOGY

Surveying the plant’s world by magnetic resonance imaging

(2012) Ljudmilla Borisjuk et al.   PLANT JOURNAL

Oil and Protein Accumulation in Developing Seeds Is Influenced by the Expression of a Cytosolic Pyrophosphatase in Arabidopsis

(2012) K. Meyer et al.   PLANT PHYSIOLOGY

Genome-Wide Analysis of the Complex Transcriptional Networks of Rice Developing Seeds

(2012) Liang-Jiao Xue et al.   PLoS One

Mathematical modeling elucidates the role of transcriptional feedback in gibberellin signaling

(2012) A. M. Middleton et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Maternal siRNAs as regulators of parental genome imbalance and gene expression in endosperm of Arabidopsis seeds

(2012) J. Lu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Creating views on integrated multidomain data

(2011) H. Rohn et al.   BIOINFORMATICS

Gene coexpression clusters and putative regulatory elements underlying seed storage reserve accumulation in Arabidopsis

(2011) Fred Y Peng et al.   BMC GENOMICS

Genome demethylation and imprinting in the endosperm

(2011) Matthew J Bauer et al.   CURRENT OPINION IN PLANT BIOLOGY

Replicate and die for your own good: Endoreduplication and cell death in the cereal endosperm

(2011) Paolo A. Sabelli   JOURNAL OF CEREAL SCIENCE

ABA biosynthesis and degradation contributing to ABA homeostasis during barley seed development under control and terminal drought-stress conditions

(2011) Christiane Seiler et al.   JOURNAL OF EXPERIMENTAL BOTANY

Analysis of Gene Expression Patterns during Seed Coat Development in Arabidopsis

(2011) Gillian Dean et al.   Molecular Plant

Natural variation in GS5 plays an important role in regulating grain size and yield in rice

(2011) Yibo Li et al.   NATURE GENETICS

Seed Traits and Genes Important for Translational Biology--Highlights from Recent Discoveries

(2011) C. Martinez-Andujar et al.   PLANT AND CELL PHYSIOLOGY

Dynamic 13C/1H NMR imaging uncovers sugar allocation in the living seed

(2011) Gerd Melkus et al.   PLANT BIOTECHNOLOGY JOURNAL

Unlocking the Barley Genome by Chromosomal and Comparative Genomics

(2011) Klaus F.X. Mayer et al.   PLANT CELL

Functional Network Construction inArabidopsisUsing Rule-Based Machine Learning on Large-Scale Data Sets

(2011) George W. Bassel et al.   PLANT CELL

Combined Noninvasive Imaging and Modeling Approaches Reveal Metabolic Compartmentation in the Barley Endosperm

(2011) Hardy Rolletschek et al.   PLANT CELL

PlaNet: Combined Sequence and Expression Comparisons across Plant Networks Derived from Seven Species

(2011) M. Mutwil et al.   PLANT CELL

Regulation and Flexibility of Genomic Imprinting during Seed Development

(2011) Michael T. Raissig et al.   PLANT CELL

Embryo and endosperm development in wheat (Triticum aestivum L.) kernels subjected to drought stress

(2011) Attila Fábián et al.   PLANT CELL REPORTS

Comparative deep transcriptional profiling of four developing oilseeds

(2011) Manuel A. Troncoso-Ponce et al.   PLANT JOURNAL

Computational analysis of storage synthesis in developing Brassica napus L. (oilseed rape) embryos: flux variability analysis in relation to 13C metabolic flux analysis

(2011) Jordan Hay et al.   PLANT JOURNAL

Metabolic network reconstruction and flux variability analysis of storage synthesis in developing oilseed rape (Brassica napus L.) embryos

(2011) Jordan Hay et al.   PLANT JOURNAL

Cofactome analyses reveal enhanced flux of carbon into oil for potential biofuel production

(2011) Daniel M. Hayden et al.   PLANT JOURNAL

Barley grains, deficient in cytosolic small subunit of ADP-glucose pyrophosphorylase, reveal coordinate adjustment of C:N metabolism mediated by an overlapping metabolic-hormonal control

(2011) Benjamin Faix et al.   PLANT JOURNAL

The MADS box genes SEEDSTICK and ARABIDOPSIS Bsister play a maternal role in fertilization and seed development

(2011) Chiara Mizzotti et al.   PLANT JOURNAL

Tissue-Specific Regulation of Gibberellin Biosynthesis in Developing Pea Seeds

(2011) C. D. Nadeau et al.   PLANT PHYSIOLOGY

Genome-Wide Analysis Reveals Gene Expression and Metabolic Network Dynamics during Embryo Development in Arabidopsis

(2011) D. Xiang et al.   PLANT PHYSIOLOGY

Duplicate Maize Wrinkled1 Transcription Factors Activate Target Genes Involved in Seed Oil Biosynthesis

(2011) B. Pouvreau et al.   PLANT PHYSIOLOGY

Enhanced Seed Oil Production in Canola by Conditional Expression of Brassica napus LEAFY COTYLEDON1 and LEC1-LIKE in Developing Seeds

(2011) H. Tan et al.   PLANT PHYSIOLOGY

Genomic Analysis of Parent-of-Origin Allelic Expression in Arabidopsis thaliana Seeds

(2011) Mary Gehring et al.   PLoS One

Seed maturation in Arabidopsis thaliana is characterized by nuclear size reduction and increased chromatin condensation

(2011) M. van Zanten et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Polycomb group proteins are required to couple seed coat initiation to fertilization

(2011) P. Roszak et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Extensive, clustered parental imprinting of protein-coding and noncoding RNAs in developing maize endosperm

(2011) M. Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Regulation of imprinted gene expression inArabidopsisendosperm

(2011) Tzung-Fu Hsieh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evidence for Network Evolution in an Arabidopsis Interactome Map

(2011) et al.   SCIENCE

Transcriptional regulation of seed storage protein genes in Arabidopsis and cereals

(2011) Dong-Mei Xi et al.   SEED SCIENCE RESEARCH

Seed size is determined by the combinations of the genes controlling different seed characteristics in rice

(2011) Song Yan et al.   THEORETICAL AND APPLIED GENETICS

A Functional Phylogenomic View of the Seed Plants

(2011) Ernest K. Lee et al.   PLoS Genetics

A Genome-Wide Survey of Imprinted Genes in Rice Seeds Reveals Imprinting Primarily Occurs in the Endosperm

(2011) Ming Luo et al.   PLoS Genetics

Experimental flux measurements on a network scale

(2011) Jörg Schwender   Frontiers in Plant Science

Spatial and temporal profiles of cytokinin biosynthesis and accumulation in developing caryopses of maize

(2010) Tomaž Rijavec et al.   ANNALS OF BOTANY

Insights from the Comparison of Plant Genome Sequences

(2010) Andrew H. Paterson et al.   Annual Review of Plant Biology

Starch: Its Metabolism, Evolution, and Biotechnological Modification in Plants

(2010) Samuel C. Zeeman et al.   Annual Review of Plant Biology

Genetic and Molecular Bases of Rice Yield

(2010) Yongzhong Xing et al.   Annual Review of Plant Biology

Reproductive cross-talk: seed development in flowering plants

(2010) Moritz K. Nowack et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Bayesian experts in exploring reaction kinetics of transcription circuits

(2010) Ryo Yoshida et al.   BIOINFORMATICS

Flux of transcript patterns during soybean seed development

(2010) Sarah I Jones et al.   BMC GENOMICS

Relationship, evolutionary fate and function of two maize co-orthologs of rice GW2 associated with kernel size and weight

(2010) Qing Li et al.   BMC PLANT BIOLOGY

Transcriptional and hormonal signaling control of Arabidopsis seed development

(2010) Xiaodong Sun et al.   CURRENT OPINION IN PLANT BIOLOGY

Development of maternal seed tissue in barley is mediated by regulated cell expansion and cell disintegration and coordinated with endosperm growth

(2010) Volodymyr Radchuk et al.   JOURNAL OF EXPERIMENTAL BOTANY

Sugar Input, Metabolism, and Signaling Mediated by Invertase: Roles in Development, Yield Potential, and Response to Drought and Heat

(2010) Yong-Ling Ruan et al.   Molecular Plant

Control of female gamete formation by a small RNA pathway in Arabidopsis

(2010) Vianey Olmedo-Monfil et al.   NATURE

The evolution of seeds

(2010) Ada Linkies et al.   NEW PHYTOLOGIST

A Novel Kinesin 13 Protein Regulating Rice Seed Length

(2010) K. Kitagawa et al.   PLANT AND CELL PHYSIOLOGY

Comprehensive Hormone Profiling in Developing Arabidopsis Seeds: Examination of the Site of ABA Biosynthesis, ABA Transport and Hormone Interactions

(2010) Yuri Kanno et al.   PLANT AND CELL PHYSIOLOGY

Diverse Roles and Mechanisms of Gene Regulation by the Arabidopsis Seed Maturation Master Regulator FUS3 Revealed by Microarray Analysis

(2010) Akiko Yamamoto et al.   PLANT AND CELL PHYSIOLOGY

Arabidopsis seed secrets unravelled after a decade of genetic and omics-driven research

(2010) Helen North et al.   PLANT JOURNAL

De-regulation of abscisic acid contents causes abnormal endosperm development in the barley mutant seg8

(2010) Nese Sreenivasulu et al.   PLANT JOURNAL

Systems Analysis of Seed Filling in Arabidopsis: Using General Linear Modeling to Assess Concordance of Transcript and Protein Expression

(2010) M. Hajduch et al.   PLANT PHYSIOLOGY

Expression of ZmLEC1 and ZmWRI1 Increases Seed Oil Production in Maize

(2010) B. Shen et al.   PLANT PHYSIOLOGY

Global analysis of gene activity during Arabidopsis seed development and identification of seed-specific transcription factors

(2010) B. H. Le et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Breeding Technologies to Increase Crop Production in a Changing World

(2010) M. Tester et al.   SCIENCE

An engineer's view on regulation of seed development

(2010) Astrid Junker et al.   TRENDS IN PLANT SCIENCE

Biochemistry and Genetics of Starch Synthesis

(2010) Peter L. Keeling et al.   Annual Review of Food Science and Technology

Metabolomics for Functional Genomics, Systems Biology, and Biotechnology

(2009) Kazuki Saito et al.   Annual Review of Plant Biology

FBA-SimVis: interactive visualization of constraint-based metabolic models

(2009) E. Grafahrend-Belau et al.   BIOINFORMATICS

Probing the endosperm gene expression landscape in Brassica napus

(2009) Yi Huang et al.   BMC GENOMICS

A Comparative Study on the Role of Cytokinins in Caryopsis Development in the Maizeminiature1Seed Mutant and Its Wild Type

(2009) Tomaž Rijavec et al.   Journal of Integrative Plant Biology

Uniparental expression of PolIV-dependent siRNAs in developing endosperm of Arabidopsis

(2009) Rebecca A. Mosher et al.   NATURE

The rice transcription factor IDEF1 is essential for the early response to iron deficiency, and induces vegetative expression of late embryogenesis abundant genes

(2009) Takanori Kobayashi et al.   PLANT JOURNAL

System Analysis of an Arabidopsis Mutant Altered in de Novo Fatty Acid Synthesis Reveals Diverse Changes in Seed Composition and Metabolism

(2009) M. Chen et al.   PLANT PHYSIOLOGY

Analysis of Metabolic Flux Phenotypes for Two Arabidopsis Mutants with Severe Impairment in Seed Storage Lipid Synthesis

(2009) J. Lonien et al.   PLANT PHYSIOLOGY

RiceArrayNet: A Database for Correlating Gene Expression from Transcriptome Profiling, and Its Application to the Analysis of Coexpressed Genes in Rice

(2009) T.-H. Lee et al.   PLANT PHYSIOLOGY

Post-Genomics Studies of Developmental Processes in Legume Seeds

(2009) R. Thompson et al.   PLANT PHYSIOLOGY

The Development of Endosperm in Grasses

(2009) P. A. Sabelli et al.   PLANT PHYSIOLOGY

Identification of cis-regulatory sequences that activate transcription in the suspensor of plant embryos

(2009) T. Kawashima et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The suspensor: not just suspending the embryo

(2009) Tomokazu Kawashima et al.   TRENDS IN PLANT SCIENCE

Transcriptome analysis of grain development in hexaploid wheat

(2008) Yongfang Wan et al.   BMC GENOMICS

The complexities of starch biosynthesis in cereal endosperms

(2008) L Curtis Hannah et al.   CURRENT OPINION IN BIOTECHNOLOGY

Functional symmetry of the B3 network controlling seed development

(2008) Masaharu Suzuki et al.   CURRENT OPINION IN PLANT BIOLOGY

Genome-wide analysis of gene expression profiles during the kernel development of maize (Zea mays L.)

(2008) Xihui Liu et al.   GENOMICS

A phenylalanine in DGAT is a key determinant of oil content and composition in maize

(2008) Peizhong Zheng et al.   NATURE GENETICS

Deletion in a gene associated with grain size increased yields during rice domestication

(2008) Ayahiko Shomura et al.   NATURE GENETICS

Molecular networks regulating Arabidopsis seed maturation, after-ripening, dormancy and germination

(2008) Michael J. Holdsworth et al.   NEW PHYTOLOGIST

Potential Sites of Bioactive Gibberellin Production during Reproductive Growth in Arabidopsis

(2008) J. Hu et al.   PLANT CELL

Deciphering gene regulatory networks that control seed development and maturation in Arabidopsis

(2008) Monica Santos-Mendoza et al.   PLANT JOURNAL

A gene expression atlas of the model legumeMedicago truncatula

(2008) Vagner A. Benedito et al.   PLANT JOURNAL

Prospects for increasing starch and sucrose yields for bioethanol production

(2008) Alison M. Smith   PLANT JOURNAL

Different Hormonal Regulation of Cellular Differentiation and Function in Nucellar Projection and Endosperm Transfer Cells: A Microdissection-Based Transcriptome Study of Young Barley Grains

(2008) J. Thiel et al.   PLANT PHYSIOLOGY

ADP-Glucose Pyrophosphorylase-Deficient Pea Embryos Reveal Specific Transcriptional and Metabolic Changes of Carbon-Nitrogen Metabolism and Stress Responses

(2008) K. Weigelt et al.   PLANT PHYSIOLOGY

Transcriptome Analysis of Proliferating Arabidopsis Endosperm Reveals Biological Implications for the Control of Syncytial Division, Cytokinin Signaling, and Gene Expression Regulation

(2008) R. C. Day et al.   PLANT PHYSIOLOGY

Molecular Plant Breeding as the Foundation for 21st Century Crop Improvement

(2008) S. P. Moose et al.   PLANT PHYSIOLOGY

Barley Grain Maturation and Germination: Metabolic Pathway and Regulatory Network Commonalities and Differences Highlighted by New MapMan/PageMan Profiling Tools

(2008) N. Sreenivasulu et al.   PLANT PHYSIOLOGY