Deep sequencing uncovers numerous small RNAs on all four replicons of the plant pathogen Agrobacterium tumefaciens

cis-Antisense RNA, Another Level of Gene Regulation in Bacteria

(2011) J. Georg et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Small RNA-mediated control of the Agrobacterium tumefaciens GABA binding protein

(2011) Ina Wilms et al.   MOLECULAR MICROBIOLOGY

The intracellular sRNA transcriptome of Listeria monocytogenes during growth in macrophages

(2011) Mobarak A. Mraheil et al.   NUCLEIC ACIDS RESEARCH

An experimentally anchored map of transcriptional start sites in the model cyanobacteriumSynechocystissp. PCC6803

(2011) Jan Mitschke et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Role of Small RNAs in Host-Microbe Interactions

(2010) Surekha Katiyar-Agarwal et al.   Annual Review of Phytopathology

A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium meliloti

(2010) Jan-Philip Schlüter et al.   BMC GENOMICS

Genome-wide detection of predicted non-coding RNAs in Rhizobium etli expressed during free-living and host-associated growth using a high-resolution tiling array

(2010) Maarten Vercruysse et al.   BMC GENOMICS

Regulatory RNA in Bacterial Pathogens

(2010) Kai Papenfort et al.   Cell Host & Microbe

New insights into an old story: Agrobacterium-induced tumour formation in plants by plant transformation

(2010) Andrea Pitzschke et al.   EMBO JOURNAL

Integrating anaerobic/aerobic sensing and the general stress response through the ArcZ small RNA

(2010) Pierre Mandin et al.   EMBO JOURNAL

Proteomic and transcriptomic characterization of a virulence-deficient phosphatidylcholine-negative Agrobacterium tumefaciens mutant

(2010) Sonja Klüsener et al.   MOLECULAR GENETICS AND GENOMICS

A dual-function sRNA from B. subtilis: SR1 acts as a peptide encoding mRNA on the gapA operon

(2010) Matthias Gimpel et al.   MOLECULAR MICROBIOLOGY

The primary transcriptome of the major human pathogen Helicobacter pylori

(2010) Cynthia M. Sharma et al.   NATURE

RNAs: regulators of bacterial virulence

(2010) Jonas Gripenland et al.   NATURE REVIEWS MICROBIOLOGY

Experimental discovery of small RNAs in Staphylococcus aureus reveals a riboregulator of central metabolism

(2010) Chantal Bohn et al.   NUCLEIC ACIDS RESEARCH

Computational prediction of sRNAs and their targets in bacteria

(2010) Rolf Backofen et al.   RNA Biology

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Deep RNA sequencing of L. monocytogenes reveals overlapping and extensive stationary phase and sigma B-dependent transcriptomes, including multiple highly transcribed noncoding RNAs

(2009) Haley F Oliver et al.   BMC GENOMICS

A trans-Acting Riboswitch Controls Expression of the Virulence Regulator PrfA in Listeria monocytogenes

(2009) Edmund Loh et al.   CELL

Regulatory RNAs in Bacteria

(2009) Lauren S. Waters et al.   CELL

Experimental approaches for the discovery and characterization of regulatory small RNA

(2009) Cynthia Mira Sharma et al.   CURRENT OPINION IN MICROBIOLOGY

Next generation sequencing of microbial transcriptomes: challenges and opportunities

(2009) Arnoud H.M. van Vliet   FEMS MICROBIOLOGY LETTERS

Small Stress Response Proteins in Escherichia coli: Proteins Missed by Classical Proteomic Studies

(2009) M. R. Hemm et al.   JOURNAL OF BACTERIOLOGY

Regulatory RNAs in prokaryotes: here, there and everywhere

(2009) Franz Narberhaus et al.   MOLECULAR MICROBIOLOGY

Photooxidative stress-induced and abundant small RNAs in Rhodobacter sphaeroides

(2009) Bork A. Berghoff et al.   MOLECULAR MICROBIOLOGY

Specific and pleiotropic patterns of mRNA regulation by ArcZ, a conserved, Hfq-dependent small RNA

(2009) Kai Papenfort et al.   MOLECULAR MICROBIOLOGY

The Listeria transcriptional landscape from saprophytism to virulence

(2009) Alejandro Toledo-Arana et al.   NATURE

Mining regulatory 5′UTRs from cDNA deep sequencing datasets

(2009) Jonathan Livny et al.   NUCLEIC ACIDS RESEARCH

Deep sequencing-based discovery of the Chlamydia trachomatis transcriptome

(2009) Marco Albrecht et al.   NUCLEIC ACIDS RESEARCH

Experimental discovery of sRNAs in Vibrio cholerae by direct cloning, 5S/tRNA depletion and parallel sequencing

(2009) Jane M. Liu et al.   NUCLEIC ACIDS RESEARCH

Deep sequencing analysis of the Methanosarcina mazei Go1 transcriptome in response to nitrogen availability

(2009) D. Jager et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Degradation of cytoplasmic substrates by FtsH, a membrane-anchored protease with many talents

(2009) Franz Narberhaus et al.   RESEARCH IN MICROBIOLOGY

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Prediction of Sinorhizobium meliloti sRNA genes and experimental detection in strain 2011

(2008) Claudio Valverde et al.   BMC GENOMICS

Detection of small RNAs in Pseudomonas aeruginosa by RNomics and structure-based bioinformatic tools

(2008) E. Sonnleitner et al.   MICROBIOLOGY-SGM

Small non-coding RNAs in Caulobacter crescentus

(2008) Stephen G. Landt et al.   MOLECULAR MICROBIOLOGY

Infiltration withAgrobacterium tumefaciensInduces Host Defense and Development-Dependent Responses in the Infiltrated Zone

(2008) Gail J. Pruss et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

The small RNA GlmY acts upstream of the sRNA GlmZ in the activation of glmS expression and is subject to regulation by polyadenylation in Escherichia coli

(2008) Birte Reichenbach et al.   NUCLEIC ACIDS RESEARCH

Small RNAs encoded within genetic islands of Salmonella typhimurium show host-induced expression and role in virulence

(2008) Gilly Padalon-Brauch et al.   NUCLEIC ACIDS RESEARCH

Two Seemingly Homologous Noncoding RNAs Act Hierarchically to Activate glmS mRNA Translation

(2008) Johannes H Urban et al.   PLOS BIOLOGY

Deep Sequencing Analysis of Small Noncoding RNA and mRNA Targets of the Global Post-Transcriptional Regulator, Hfq

(2008) Alexandra Sittka et al.   PLoS Genetics