4.8 Article

Reprogramming Nonribosomal Peptide Synthetases for Clickable Amino Acids

期刊

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
卷 53, 期 38, 页码 10105-10108

出版社

WILEY-V C H VERLAG GMBH
DOI: 10.1002/anie.201405281

关键词

adenylation domain; mutagenesis; click chemistry; diketopiperazine; nonribosomal peptide

资金

  1. Schweizerischer Nationalfond
  2. ETH Zurich
  3. Stipendienfonds der Schweizer Chemischen Industrie
  4. Studienstiftung des deutschen Volkes

向作者/读者索取更多资源

Nonribosomal peptide synthetases (NRPSs) are multifunctional enzymes that produce a wide array of bioactive peptides. Here we show that a single tryptophan-to-serine mutation in phenylalanine-specific NRPS adenylation domains enables the efficient activation of non-natural aromatic amino acids functionalized with azide and alkyne groups. The resulting 105-fold switch in substrate specificity was achieved without appreciable loss of catalytic efficiency. Moreover, the effective communication of the modified A domains with downstream modules in dipeptide synthetases permitted incorporation of O-propargyl-L-tyrosine into diketopiperazines both in vitro and in vivo, even in the presence of competing phenylalanine. Because azides and alkynes readily undergo bioorthogonal click reactions, reprogramming NRPSs to accept non-natural amino acids that contain these groups provides a potentially powerful means of isolating, labeling, and modifying biologically active peptides.

作者

我是这篇论文的作者
点击您的名字以认领此论文并将其添加到您的个人资料中。

评论

主要评分

4.8
评分不足

次要评分

新颖性
-
重要性
-
科学严谨性
-
评价这篇论文

推荐

Article Chemistry, Multidisciplinary

Sulfonium Acids Loaded onto an Unusual Thiotemplate Assembly Line Construct the Cyclopropanol Warhead of a Burkholderia Virulence Factor

Felix Trottmann, Keishi Ishida, Jakob Franke, Aleksa Stanisic, Mie Ishida-Ito, Hajo Kries, Georg Pohnert, Christian Hertweck

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2020)

Article Chemistry, Physical

Engineered Nonribosomal Peptide Synthetase Shows Opposite Amino Acid Loading and Condensation Specificity

Aleksa Stanisic, Annika Huesken, Philipp Stephan, David L. Niquille, Jochen Reinstein, Hajo Kries

Summary: Engineering of nonribosomal peptide synthetases (NRPSs) faces challenges, with specificity filters determining success and debate over the contribution of adenylation (A) and condensation (C) domains. Kinetic modeling shows that product specificity changes during reactions, with the A-domain overriding C-domain specificity when the thiolation domain loading reaches a steady state. This nonlinear modeling provides critical insights into how the interplay of the A- and C-domains determines product specificity in NRPSs.

ACS CATALYSIS (2021)

Article Chemistry, Multidisciplinary

Total Synthesis and Functional Evaluation of IORs, Sulfonolipid-based Inhibitors of Cell Differentiation in Salpingoeca rosetta

Luka Raguz, Chia-Chi Peng, Florentine U. N. Rutaganira, Thomas Kruger, Aleksa Stanisic, Theresa Jautzus, Hajo Kries, Olaf Kniemeyer, Axel A. Brakhage, Nicole King, Christine Beemelmanns

Summary: The study developed a synthetic compound IOR-1A that inhibits rosette formation in S.rosetta and demonstrated the biochemical basis of cell differentiation processes within S.rosetta through the synthesis of derivatives and evaluation.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2022)

Article Chemistry, Multidisciplinary

Pathogenic bacteria remodel central metabolic enzyme to build a cyclopropanol warhead

Felix Trottmann, Keishi Ishida, Mie Ishida-Ito, Hajo Kries, Michael Groll, Christian Hertweck

Summary: Bacteria of the Burkholderia pseudomallei group are a global health threat, causing infectious diseases. A conserved gene cluster in these bacteria is responsible for the synthesis of polyketides, which are critical for virulence. Researchers have discovered that an enzyme called BurG is involved in the formation of a cyclopropanol ring, providing insight into the biochemical basis of this process. This finding has important implications for the development of antivirulence strategies.

NATURE CHEMISTRY (2022)

Article Biochemistry & Molecular Biology

Proof-Reading Thioesterase Boosts Activity of Engineered Nonribosomal Peptide Synthetase

Farzaneh Pourmasoumi, Sayantan De, Huiyun Peng, Felix Trottmann, Christian Hertweck, Hajo Kries

Summary: Nonribosomal peptide synthetases (NRPSs) are a valuable source of natural products, and re-engineering them is an attractive approach for structurally diversified active compounds. This study applied a protein splitting strategy to the gramicidin S NRPS and found that the addition of the type II thioesterase GrsT enhanced production. The researchers attribute this activity enhancement to the removal of a stalled intermediate from the split NRPS. These results highlight the usefulness of type II thioesterases in NRPS engineering.

ACS CHEMICAL BIOLOGY (2022)

Article Chemistry, Multidisciplinary

Directed Evolution of Piperazic Acid Incorporation by a Nonribosomal Peptide Synthetase

Philipp Stephan, Chloe Langley, Daniela Winkler, Jerome Basquin, Lorenzo Caputi, Sarah E. E. O'Connor, Hajo Kries

Summary: Engineering of biosynthetic enzymes is used to synthesize antibiotics analogues. This study focuses on nonribosomal peptide synthetases (NRPSs) responsible for producing antimicrobial peptides. By directed evolution, the substrate specificity of an adenylation domain of a Pro-specific NRPS module was completely switched to a non-standard amino acid. This achievement was made through screening of mutant libraries and can be replicated with different substrates and NRPS modules. New possibilities for modifying NRPS specificity in a biosynthetically useful way are presented.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2023)

Article Chemistry, Organic

Automated, Capsule-Based Suzuki-Miyaura Cross Couplings

Guillaume Coin, Tuo Jiang, Samuele Bordi, Paula L. Nichols, Benedikt M. Wanner, Jeffrey W. Bode

Summary: The development of an automated process for Suzuki-Miyaura cross couplings is described, which involves automatic completion of the entire reaction, workup, and product isolation without any user involvement except for loading the starting materials and reaction capsule. This practical and simple method has been successfully demonstrated for the production of desired biaryl products using various aryl bromides and boronic acids, and it is also effective for late-stage functionalization of aryl halides in bioactive molecules.

ORGANIC LETTERS (2023)

Review Biochemistry & Molecular Biology

Biomimetic engineering of nonribosomal peptide synthesis

Kexin Zhang, Hajo Kries

Summary: Nonribosomal peptides (NRPs) are gaining attention for their diverse biological activities and potential applications in medicine and agriculture. The natural diversity of NRPs is a result of evolutionary processes occurring over millions of years. Recent studies have uncovered the mechanisms by which NRPSs evolve, and mimicking natural evolution could be a useful strategy for engineering NRPSs to produce novel compounds. NRPs also offer promise for drug discovery, particularly in the context of antibiotic-resistant bacteria. This review discusses the engineering potential of NRPSs in light of their evolutionary history.

BIOCHEMICAL SOCIETY TRANSACTIONS (2023)

Article Biochemical Research Methods

Non-invasive monitoring of microbiota and host metabolism using secondary electrospray ionization-mass spectrometry

Jiayi Lan, Giorgia Greter, Bettina Streckenbach, Benedikt Wanner, Markus Arnoldini, Renato Zenobi, Emma Slack

Summary: We demonstrate the use of secondary electrospray ionization-mass spectrometry (SESI-MS) to non-invasively monitor the metabolic activity of the intestinal microbiome in a live mouse. By comparing the metabolites released by gut bacteria in culture with those in gnotobiotic mice, we show that the volatilome is characteristic of the dominant colonizing bacteria. Combining SESI-MS with heavy-isotope-labeled microbiota-accessible sugars reveals microbial cross-feeding within the animal intestine.

CELL REPORTS METHODS (2023)

Article Biochemistry & Molecular Biology

Biosynthetic incorporation of fluorinated amino acids into the nonribosomal peptide gramicidin S

Maximilian Muell, Farzaneh Pourmasoumi, Leon Wehrhan, Olena Nosovska, Philipp Stephan, Hannah Zeihe, Ivan Vilotijevic, Bettina G. Keller, Hajo Kries

Summary: Fluorine is a crucial element in medicinal chemistry, as it enhances the pharmacological properties of drugs. This study aimed to produce fluorinated analogues of the antimicrobial cyclic decapeptide gramicidin S (GS) through biosynthesis. However, results showed that the A-domain of the NRPS module GrsA rejects 4-fluorinated analogues due to an interrupted aromatic interaction. A GrsA mutant, W239S, was found to improve the incorporation of 4-fluorinated amino acids into GS. These findings provide new insights into NRPS behavior and strategies for the biosynthesis of fluorinated peptides.

RSC CHEMICAL BIOLOGY (2023)

Article Chemistry, Multidisciplinary

A vending machine for drug-like molecules - automated synthesis of virtual screening hits

Angus E. McMillan, Wilson W. X. Wu, Paula L. Nichols, Benedikt M. Wanner, Jeffrey W. Bode

Summary: Due to the high false positive rates in virtual screening, synthesising and validating prospective hits can be time consuming and laborious. This study evaluated large virtual libraries and identified one sub-library with unique drug-like structures. By using automated synthesis and a streamlined method of relative stereochemical assignment, the preparation of virtual screening hits was accelerated and user efficiency significantly improved.

CHEMICAL SCIENCE (2022)

Article Chemistry, Multidisciplinary

Macrophage-targeting oligopeptides from Mortierella alpina

Jacob M. Wurlitzer, Aleksa Stanisic, Sebastian Ziethe, Paul M. Jordan, Kerstin Guenther, Oliver Werz, Hajo Kries, Markus Gressler

Summary: This study identified and characterized the nonribosomal peptide synthetase (NRPS) MalA in early diverging fungi, which catalyzes the biosynthesis of the surface-active biosurfactants malpinins. Specificity-based precursor-directed biosynthesis resulted in the production of 20 new congeners, and the study demonstrated the importance of fungi as a source of chemically tractable compounds for pharmaceutical applications.

CHEMICAL SCIENCE (2022)

Article Chemistry, Multidisciplinary

An integrated console for capsule-based, automated organic synthesis

Tuo Jiang, Samuele Bordi, Angus E. McMillan, Kuang-Yen Chen, Fumito Saito, Paula L. Nichols, Benedikt M. Wanner, Jeffrey W. Bode

Summary: The study introduces an instrument capable of automatically executing complex organic reactions in the laboratory, successfully implementing two desirable reaction classes in the field of organic synthesis. This system provides a convenient and safe method for future developers to conduct organic synthesis.

CHEMICAL SCIENCE (2021)

Article Biochemistry & Molecular Biology

Engineering DNA-Templated Nonribosomal Peptide Synthesis

Hsin-Mei Huang, Philipp Stephan, Hajo Kries

Summary: By incorporating zinc-finger tags into split NRPS modules to create DNA-templated NRPS (DT-NRPS), researchers have demonstrated that covalent intermediate channeling is possible along the DNA template for the biosynthesis of non-ribosomal peptides and other polymers. This innovative catalytic strategy outperforms previously reported DNA-templated enzyme cascades in terms of DNA acceleration, indicating its potential for sequence-controlled biosynthesis.

CELL CHEMICAL BIOLOGY (2021)

Article Biotechnology & Applied Microbiology

Bacterial-Like Nonribosomal Peptide Synthetases Produce Cyclopeptides in the Zygomycetous Fungus Mortierella alpina

Jacob M. Wurlitzer, Aleksa Stanisic, Ina Wasmuth, Sandra Jungmann, Dagmar Fischer, Hajo Kries, Markus Gressler

Summary: This study reports the biosynthesis of cyclic pentapeptides in Mortierella alpina, highlighting early-diverging fungi as an underestimated resource of natural products. The enzymes involved in this biosynthesis are more closely related to bacterial NRPSs, suggesting a bacterial origin of these NRPS genes in Mortierella. This discovery establishes early-diverging fungi as prolific natural compound producers and sheds light on the origin of their biosynthetic capacity.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2021)

暂无数据