Advantages of meta-total RNA sequencing (MeTRS) over shotgun metagenomics and amplicon-based sequencing in the profiling of complex microbial communities
出版年份 2018 全文链接
标题
Advantages of meta-total RNA sequencing (MeTRS) over shotgun metagenomics and amplicon-based sequencing in the profiling of complex microbial communities
作者
关键词
-
出版物
npj Biofilms and Microbiomes
Volume 4, Issue 1, Pages -
出版商
Springer Nature
发表日期
2018-01-10
DOI
10.1038/s41522-017-0046-x
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- RiboTagger: fast and unbiased 16S/18S profiling using whole community shotgun metagenomic or metatranscriptome surveys
- (2016) Chao Xie et al. BMC BIOINFORMATICS
- 16S rRNA gene sequencing of mock microbial populations- impact of DNA extraction method, primer choice and sequencing platform
- (2016) Fiona Fouhy et al. BMC MICROBIOLOGY
- Characterization of the Gut Microbiome Using 16S or Shotgun Metagenomics
- (2016) Juan Jovel et al. Frontiers in Microbiology
- MetaPhlAn2 for enhanced metagenomic taxonomic profiling
- (2015) Duy Tin Truong et al. NATURE METHODS
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Genotyping 1000 yeast strains by next-generation sequencing
- (2013) Stefan Wilkening et al. BMC GENOMICS
- Evaluating rRNA as an indicator of microbial activity in environmental communities: limitations and uses
- (2013) Steven J Blazewicz et al. ISME Journal
- Towards a unified paradigm for sequence-based identification of fungi
- (2013) Urmas Kõljalg et al. MOLECULAR ECOLOGY
- FungiQuant: A broad-coverage fungal quantitative real-time PCR assay
- (2012) Cindy M Liu et al. BMC MICROBIOLOGY
- BactQuant: An enhanced broad-coverage bacterial quantitative real-time PCR assay
- (2012) Cindy M Liu et al. BMC MICROBIOLOGY
- New primers to amplify the fungal ITS2 region - evaluation by 454-sequencing of artificial and natural communities
- (2012) Katarina Ihrmark et al. FEMS MICROBIOLOGY ECOLOGY
- Metagenomic microbial community profiling using unique clade-specific marker genes
- (2012) Nicola Segata et al. NATURE METHODS
- The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
- (2012) Christian Quast et al. NUCLEIC ACIDS RESEARCH
- FLASH: fast length adjustment of short reads to improve genome assemblies
- (2011) T. Magoc et al. BIOINFORMATICS
- rRNASelector: A computer program for selecting ribosomal RNA encoding sequences from metagenomic and metatranscriptomic shotgun libraries
- (2011) Jae-Hak Lee et al. JOURNAL OF MICROBIOLOGY
- Search and clustering orders of magnitude faster than BLAST
- (2010) Robert C. Edgar BIOINFORMATICS
- Aneuploidy confers quantitative proteome changes and phenotypic variation in budding yeast
- (2010) Norman Pavelka et al. NATURE
- QIIME allows analysis of high-throughput community sequencing data
- (2010) J Gregory Caporaso et al. NATURE METHODS
- Aneuploidy Underlies Rapid Adaptive Evolution of Yeast Cells Deprived of a Conserved Cytokinesis Motor
- (2008) Giulia Rancati et al. CELL
- Then and now: use of 16S rDNA gene sequencing for bacterial identification and discovery of novel bacteria in clinical microbiology laboratories
- (2008) P.C.Y. Woo et al. CLINICAL MICROBIOLOGY AND INFECTION
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