Decline of genetic diversity in ancient domestic stallions in Europe

Ancient genomes revisit the ancestry of domestic and Przewalski’s horses

(2018) Charleen Gaunitz et al.   SCIENCE

Ancient genomic changes associated with domestication of the horse

(2017) Pablo Librado et al.   SCIENCE

The origin of ambling horses

(2016) Saskia Wutke et al.   CURRENT BIOLOGY

Bayesian Inference of Natural Selection from Allele Frequency Time Series

(2016) Joshua G. Schraiber et al.   GENETICS

Spotted phenotypes in horses lost attractiveness in the Middle Ages

(2016) Saskia Wutke et al.   Scientific Reports

Bayesian Inference of Natural Selection from Allele Frequency Time Series

(2016) Joshua G. Schraiber et al.   GENETICS

Evolutionary Genomics and Conservation of the Endangered Przewalski’s Horse

(2015) Clio Der Sarkissian et al.   CURRENT BIOLOGY

Population genomics of Bronze Age Eurasia

(2015) Morten E. Allentoft et al.   NATURE

Tracking the origins of Yakutian horses and the genetic basis for their fast adaptation to subarctic environments

(2015) Pablo Librado et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Y genetic variation and phenotypic diversity in health and disease

(2015) Laure K Case et al.   Biology of Sex Differences

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Twenty-five thousand years of fluctuating selection on leopard complex spotting and congenital night blindness in horses

(2014) Arne Ludwig et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Genome flux and stasis in a five millennium transect of European prehistory

(2014) Cristina Gamba et al.   Nature Communications

Identification of Genetic Variation on the Horse Y Chromosome and the Tracing of Male Founder Lineages in Modern Breeds

(2013) Barbara Wallner et al.   PLoS One

Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments

(2013) J. Dabney et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Reconstructing the origin and spread of horse domestication in the Eurasian steppe

(2012) V. Warmuth et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mitochondrial genomes from modern horses reveal the major haplogroups that underwent domestication

(2012) A. Achilli et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Whole mitochondrial genome sequencing of domestic horses reveals incorporation of extensive wild horse diversity during domestication

(2011) Sebastian Lippold et al.   BMC EVOLUTIONARY BIOLOGY

A Massively Parallel Sequencing Approach Uncovers Ancient Origins and High Genetic Variability of Endangered Przewalski's Horses

(2011) Hiroki Goto et al.   Genome Biology and Evolution

Discovery of lost diversity of paternal horse lineages using ancient DNA

(2011) Sebastian Lippold et al.   Nature Communications

TempNet: a method to display statistical parsimony networks for heterochronous DNA sequence data

(2011) Stefan Prost et al.   Methods in Ecology and Evolution

Approximate Bayesian Computation in Evolution and Ecology

(2010) Mark A. Beaumont   Annual Review of Ecology Evolution and Systematics

pegas: an R package for population genetics with an integrated-modular approach

(2010) E. Paradis   BIOINFORMATICS

Population dynamic of the extinct European aurochs: genetic evidence of a north-south differentiation pattern and no evidence of post-glacial expansion

(2010) Stefano Mona et al.   BMC EVOLUTIONARY BIOLOGY

Testing temporal changes in allele frequencies: a simulation approach

(2010) EDSON SANDOVAL-CASTELLANOS   Genetics Research

Origin and History of Mitochondrial DNA Lineages in Domestic Horses

(2010) Michael Cieslak et al.   PLoS One

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

The Earliest Horse Harnessing and Milking

(2009) A. K. Outram et al.   SCIENCE

Horse Domestication and Conservation Genetics of Przewalski's Horse Inferred from Sex Chromosomal and Autosomal Sequences

(2008) Allison N. Lau et al.   MOLECULAR BIOLOGY AND EVOLUTION

Identification of the Yellow Skin Gene Reveals a Hybrid Origin of the Domestic Chicken

(2008) Jonas Eriksson et al.   PLoS Genetics