Implications and future prospects for evolutionary analyses of DNA in historical herbarium collections

Herbarium collection-based phylogenetics of the ragweeds ( Ambrosia , Asteraceae)

(2018) Michael D. Martin et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The rate and potential relevance of new mutations in a colonizing plant lineage

(2018) Moises Exposito-Alonso et al.   PLoS Genetics

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(2017)   Molecular Ecology Resources

A non-destructive DNA sampling technique for herbarium specimens

(2017) Lara D. Shepherd   PLoS One

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(2017)   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

Historic Late Blight Outbreaks Caused by a Widespread Dominant Lineage of Phytophthora infestans (Mont.) de Bary

(2017) Amanda C. Saville et al.   PLoS One

Early-Mid Pleistocene genetic differentiation and range expansions as exemplified by invasive Eurasian Bunias orientalis (Brassicaceae) indicates the Caucasus as key region

(2017) Marcus A. Koch et al.   Scientific Reports

Synchronous genetic turnovers across Western Eurasia in Late Pleistocene collared lemmings

(2016) Eleftheria Palkopoulou et al.   GLOBAL CHANGE BIOLOGY

Continental-scale spatial phylogenetics of Australian angiosperms provides insights into ecology, evolution and conservation

(2016) Andrew H. Thornhill et al.   JOURNAL OF BIOGEOGRAPHY

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(2016)   MOLECULAR ECOLOGY

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(2016)   Molecular Ecology Resources

Retrieval of hundreds of nuclear loci from herbarium specimens

(2016) Michelle L. Hart et al.   TAXON

Temporal patterns of damage and decay kinetics of DNA retrieved from plant herbarium specimens

(2016) Clemens L. Weiß et al.   Royal Society Open Science

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(2016)   BIOLOGICAL REVIEWS

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(2016)   JOURNAL OF EVOLUTIONARY BIOLOGY

Herbarium genomics: plastome sequence assembly from a range of herbarium specimens using an Iterative Organelle Genome Assembly pipeline

(2015) Freek T. Bakker et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Museomics illuminate the history of an extinct, paleoendemic plant lineage (Hesperelaea, Oleaceae) known from an 1875 collection from Guadalupe Island, Mexico

(2015) Loubab Zedane et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Computational analyses of ancient pathogen DNA from herbarium samples: challenges and prospects

(2015) Kentaro Yoshida et al.   Frontiers in Plant Science

From museums to genomics: old herbarium specimens shed light on a C3 to C4 transition

(2014) Guillaume Besnard et al.   JOURNAL OF EXPERIMENTAL BOTANY

Persistence of the Mitochondrial Lineage Responsible for the Irish Potato Famine in Extant New World Phytophthora infestans

(2014) Michael D. Martin et al.   MOLECULAR BIOLOGY AND EVOLUTION

Herbarium specimens reveal a historical shift in phylogeographic structure of common ragweed during native range disturbance

(2014) Michael D. Martin et al.   MOLECULAR ECOLOGY

Rapid genetic adaptation precedes the spread of an exotic plant species

(2014) Katrien Vandepitte et al.   MOLECULAR ECOLOGY

Characterization of ancient and modern genomes by SNP detection and phylogenomic and metagenomic analysis using PALEOMIX

(2014) Mikkel Schubert et al.   Nature Protocols

The largest type study of Agaricales species to date: bringing identification and nomenclature of Phlegmacium (Cortinarius) into the DNA era

(2014) K. Liimatainen et al.   PERSOONIA

Separating endogenous ancient DNA from modern day contamination in a Siberian Neandertal

(2014) Pontus Skoglund et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genetic analyses of herbarium material: Is more care required?

(2014) Lara Shepherd et al.   TAXON

Phylogenetic measures of biodiversity and neo- and paleo-endemism in Australian Acacia

(2014) Brent D. Mishler et al.   Nature Communications

Mining Herbaria for Plant Pathogen Genomes: Back to the Future

(2014) Kentaro Yoshida et al.   PLoS Pathogens

mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters

(2013) Hákon Jónsson et al.   BIOINFORMATICS

Genomic Treasure Troves: Complete Genome Sequencing of Herbarium and Insect Museum Specimens

(2013) Martijn Staats et al.   PLoS One

From the Cover: Cozzarelli Prize Winner: Historical collections reveal patterns of diffusion of sweet potato in Oceania obscured by modern plant movements and recombination

(2013) C. Roullier et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ancient DNA Damage

(2013) J. Dabney et al.   Cold Spring Harbor Perspectives in Biology

Reconstructing genome evolution in historic samples of the Irish potato famine pathogen

(2013) Michael D. Martin et al.   Nature Communications

Increasing the efficiency of digitization workflows for herbarium specimens

(2012) Melissa Tulig et al.   ZooKeys

DNA Damage in Plant Herbarium Tissue

(2011) Martijn Staats et al.   PLoS One

Natural history collections as sources of long-term datasets

(2011) Adrian M. Lister   TRENDS IN ECOLOGY & EVOLUTION

Darwin’s Galapagos gourd: providing new insights 175 years after his visit

(2010) Patrizia Sebastian et al.   JOURNAL OF BIOGEOGRAPHY

A Gift from the New World? The West African Crop Cucumeropsis mannii and the American Posadaea sphaerocarpa (Cucurbitaceae) are the Same Species

(2010) Hanno Schaefer et al.   SYSTEMATIC BOTANY

Malpighiales phylogenetics: Gaining ground on one of the most recalcitrant clades in the angiosperm tree of life

(2009) Kenneth J. Wurdack et al.   AMERICAN JOURNAL OF BOTANY

Calibrating the Tree of Life: fossils, molecules and evolutionary timescales

(2009) Félix Forest   ANNALS OF BOTANY

DNA from herbarium specimens settles a controversy about origins of the European potato

(2008) Mercedes Ames et al.   AMERICAN JOURNAL OF BOTANY