Genomic variation and biogeography of Antarctic haloarchaea

MEGAN-LR: new algorithms allow accurate binning and easy interactive exploration of metagenomic long reads and contigs

(2018) Daniel H. Huson et al.   Biology Direct

A plasmid from an Antarctic haloarchaeon uses specialized membrane vesicles to disseminate and infect plasmid-free cells

(2017) Susanne Erdmann et al.   Nature Microbiology

Ecophysiological Distinctions of Haloarchaea from a Hypersaline Antarctic Lake as Determined by Metaproteomics

(2016) Bernhard Tschitschko et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

N-Glycosylation Is Important for Proper Haloferax volcanii S-Layer Stability and Function

(2016) Adi Tamir et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Antarctic biogeography revisited: updating the Antarctic Conservation Biogeographic Regions

(2016) Aleks Terauds et al.   DIVERSITY AND DISTRIBUTIONS

On the use of high-throughput sequencing for the study of cyanobacterial diversity in Antarctic aquatic mats

(2016) Igor Stelmach Pessi et al.   JOURNAL OF PHYCOLOGY

MEGAHIT v1.0: A fast and scalable metagenome assembler driven by advanced methodologies and community practices

(2016) Dinghua Li et al.   METHODS

IMG/M: integrated genome and metagenome comparative data analysis system

(2016) I-Min A. Chen et al.   NUCLEIC ACIDS RESEARCH

Developing a genetic manipulation system for the Antarctic archaeon, Halorubrum lacusprofundi: investigating acetamidase gene function

(2016) Y. Liao et al.   Scientific Reports

Antarctic archaea–virus interactions: metaproteome-led analysis of invasion, evasion and adaptation

(2015) Bernhard Tschitschko et al.   ISME Journal

Microbial ecology of Antarctic aquatic systems

(2015) Ricardo Cavicchioli   NATURE REVIEWS MICROBIOLOGY

Microbial species delineation using whole genome sequences

(2015) Neha J. Varghese et al.   NUCLEIC ACIDS RESEARCH

The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4)

(2015) Marcel Huntemann et al.   Standards in Genomic Sciences

De NovoSequences ofHaloquadratum walsbyifrom Lake Tyrrell, Australia, Reveal a Variable Genomic Landscape

(2015) Benjamin J. Tully et al.   ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL

InterProScan 5: genome-scale protein function classification

(2014) P. Jones et al.   BIOINFORMATICS

Microbial ecology of an Antarctic hypersaline lake: genomic assessment of ecophysiology among dominant haloarchaea

(2014) Timothy J Williams et al.   ISME Journal

N-Linked Glycosylation in Archaea: a Structural, Functional, and Genetic Analysis

(2014) Ken F. Jarrell et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Prochlorococcus: the structure and function of collective diversity

(2014) Steven J. Biller et al.   NATURE REVIEWS MICROBIOLOGY

Haloferax volcanii N-Glycosylation: Delineating the Pathway of dTDP-rhamnose Biosynthesis

(2014) Lina Kaminski et al.   PLoS One

Analysis Tool Web Services from the EMBL-EBI

(2013) Hamish McWilliam et al.   NUCLEIC ACIDS RESEARCH

High level of intergenera gene exchange shapes the evolution of haloarchaea in an isolated Antarctic lake

(2013) M. Z. DeMaere et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dynamic Viral Populations in Hypersaline Systems as Revealed by Metagenomic Assembly

(2012) Joanne B. Emerson et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

N-Glycosylation of Haloferax volcanii Flagellins Requires Known Agl Proteins and Is Essential for Biosynthesis of Stable Flagella

(2012) Manuela Tripepi et al.   JOURNAL OF BACTERIOLOGY

Diversity in prokaryotic glycosylation: an archaeal-derived N-linked glycan contains legionaminic acid

(2012) Lina Kandiba et al.   MOLECULAR MICROBIOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Unification of Cas protein families and a simple scenario for the origin and evolution of CRISPR-Cas systems

(2011) Kira S Makarova et al.   Biology Direct

Adaptive seeds tame genomic sequence comparison

(2011) S. M. Kielbasa et al.   GENOME RESEARCH

Genome Analyses of Icelandic Strains of Sulfolobus islandicus, Model Organisms for Genetic and Virus-Host Interaction Studies

(2011) L. Guo et al.   JOURNAL OF BACTERIOLOGY

Genomic island variability facilitates Prochlorococcus–virus coexistence

(2011) Sarit Avrani et al.   NATURE

Haloquadratum walsbyi : Limited Diversity in a Global Pond

(2011) Mike L. Dyall-Smith et al.   PLoS One

A low-polynomial algorithm for assembling clusters of orthologous groups from intergenomic symmetric best matches

(2010) David M. Kristensen et al.   BIOINFORMATICS

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

Metaproteogenomic analysis of a dominant green sulfur bacterium from Ace Lake, Antarctica

(2010) Charmaine Ng et al.   ISME Journal

Fine-scale evolution: genomic, phenotypic and ecological differentiation in two coexisting Salinibacter ruber strains

(2010) Arantxa Peña et al.   ISME Journal

Comparative Analysis of the Mosaic Genomes of Tailed Archaeal Viruses and Proviruses Suggests Common Themes for Virion Architecture and Assembly with Tailed Viruses of Bacteria

(2010) Mart Krupovič et al.   JOURNAL OF MOLECULAR BIOLOGY

S-Layer Glycoproteins and Flagellins: Reporters of Archaeal Posttranslational Modifications

(2010) Ken F. Jarrell et al.   ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL

Structuring effects of climate-related environmental factors on Antarctic microbial mat communities

(2009) E Verleyen et al.   AQUATIC MICROBIAL ECOLOGY

Reordering contigs of draft genomes using the Mauve Aligner

(2009) Anna I. Rissman et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Explaining microbial population genomics through phage predation

(2009) Francisco Rodriguez-Valera et al.   NATURE REVIEWS MICROBIOLOGY

Alternative flagellar filament types in the haloarchaeon Haloarcula marismortui

(2008) Michael G. Pyatibratov et al.   CANADIAN JOURNAL OF MICROBIOLOGY

AglC and AglK Are Involved in Biosynthesis and Attachment of Diacetylated Glucuronic Acid to the N-Glycan in Methanococcus voltae

(2008) B. Chaban et al.   JOURNAL OF BACTERIOLOGY