标题
Synthetic spike-in standards for high-throughput 16S rRNA gene amplicon sequencing
作者
关键词
-
出版物
NUCLEIC ACIDS RESEARCH
Volume -, Issue -, Pages gkw984
出版商
Oxford University Press (OUP)
发表日期
2016-10-25
DOI
10.1093/nar/gkw984
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Compositional data analysis of the microbiome: fundamentals, tools, and challenges
- (2016) Matthew C.B. Tsilimigras et al. ANNALS OF EPIDEMIOLOGY
- 16S rRNA gene sequencing of mock microbial populations- impact of DNA extraction method, primer choice and sequencing platform
- (2016) Fiona Fouhy et al. BMC MICROBIOLOGY
- Diversity analysis of sulfite- and sulfate-reducing microorganisms by multiplex dsrA and dsrB amplicon sequencing using new primers and mock community-optimized bioinformatics
- (2016) Claus Pelikan et al. ENVIRONMENTAL MICROBIOLOGY
- Absolute quantification of microbial taxon abundances
- (2016) Ruben Props et al. ISME Journal
- Systematic improvement of amplicon marker gene methods for increased accuracy in microbiome studies
- (2016) Daryl M Gohl et al. NATURE BIOTECHNOLOGY
- DADA2: High-resolution sample inference from Illumina amplicon data
- (2016) Benjamin J Callahan et al. NATURE METHODS
- A method for simultaneous measurement of soil bacterial abundances and community composition via 16S rRNA gene sequencing
- (2016) Wenke Smets et al. SOIL BIOLOGY & BIOCHEMISTRY
- Adjusting microbiome profiles for differences in microbial load by spike-in bacteria
- (2016) Frank Stämmler et al. Microbiome
- An assessment of US microbiome research
- (2016) Elizabeth Stulberg et al. Nature Microbiology
- Comparing Apples and Oranges?: Next Generation Sequencing and Its Impact on Microbiome Analysis
- (2016) Adam G. Clooney et al. PLoS One
- The truth about metagenomics: quantifying and counteracting bias in 16S rRNA studies
- (2015) J Paul Brooks et al. BMC MICROBIOLOGY
- A novel conceptual approach to read-filtering in high-throughput amplicon sequencing studies
- (2015) Fernando Puente-Sánchez et al. NUCLEIC ACIDS RESEARCH
- Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform
- (2015) Melanie Schirmer et al. NUCLEIC ACIDS RESEARCH
- Sample storage conditions significantly influence faecal microbiome profiles
- (2015) Jocelyn M Choo et al. Scientific Reports
- RNA Preservation Agents and Nucleic Acid Extraction Method Bias Perceived Bacterial Community Composition
- (2015) Ann McCarthy et al. PLoS One
- Performance Comparison of Illumina and Ion Torrent Next-Generation Sequencing Platforms for 16S rRNA-Based Bacterial Community Profiling
- (2014) Stephen J. Salipante et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Limits to robustness and reproducibility in the demarcation of operational taxonomic units
- (2014) Thomas S. B. Schmidt et al. ENVIRONMENTAL MICROBIOLOGY
- Interpreting 16S metagenomic data without clustering to achieve sub-OTU resolution
- (2014) Mikhail Tikhonov et al. ISME Journal
- Minimum entropy decomposition: Unsupervised oligotyping for sensitive partitioning of high-throughput marker gene sequences
- (2014) A Murat Eren et al. ISME Journal
- Assessing technical performance in differential gene expression experiments with external spike-in RNA control ratio mixtures
- (2014) Sarah A. Munro et al. Nature Communications
- Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform
- (2013) James J. Kozich et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- UPARSE: highly accurate OTU sequences from microbial amplicon reads
- (2013) Robert C Edgar NATURE METHODS
- A mechanistic basis for amplification differences between samples and between genome regions
- (2012) Colin D Veal et al. BMC GENOMICS
- Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
- (2012) J Gregory Caporaso et al. ISME Journal
- Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing
- (2012) Nicholas A Bokulich et al. NATURE METHODS
- PCR Biases Distort Bacterial and Archaeal Community Structure in Pyrosequencing Datasets
- (2012) Ameet J. Pinto et al. PLoS One
- UCHIME improves sensitivity and speed of chimera detection
- (2011) Robert C. Edgar et al. BIOINFORMATICS
- Synthetic spike-in standards for RNA-seq experiments
- (2011) L. Jiang et al. GENOME RESEARCH
- Reproducibility and quantitation of amplicon sequencing-based detection
- (2011) Jizhong Zhou et al. ISME Journal
- Sequence-specific error profile of Illumina sequencers
- (2011) Kensuke Nakamura et al. NUCLEIC ACIDS RESEARCH
- Search and clustering orders of magnitude faster than BLAST
- (2010) Robert C. Edgar BIOINFORMATICS
- Effects of polymerase, template dilution and cycle number on PCR based 16 S rRNA diversity analysis using the deep sequencing method
- (2010) Jin-Ya Wu et al. BMC MICROBIOLOGY
- QIIME allows analysis of high-throughput community sequencing data
- (2010) J Gregory Caporaso et al. NATURE METHODS
- Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
- (2009) P. D. Schloss et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex
- (2008) Micah Hamady et al. NATURE METHODS
- Single-cell identification in microbial communities by improved fluorescence in situ hybridization techniques
- (2008) Rudolf Amann et al. NATURE REVIEWS MICROBIOLOGY
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now