Current approaches for the fitting and refinement of atomic models into cryo-EM maps using CCP-EM
出版年份 2018 全文链接
标题
Current approaches for the fitting and refinement of atomic models into cryo-EM maps using CCP-EM
作者
关键词
-
出版物
Acta Crystallographica Section D-Structural Biology
Volume 74, Issue 6, Pages 492-505
出版商
International Union of Crystallography (IUCr)
发表日期
2018-05-30
DOI
10.1107/s2059798318007313
参考文献
相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。- Automated map sharpening by maximization of detail and connectivity
- (2018) Thomas C. Terwilliger et al. Acta Crystallographica Section D-Structural Biology
- Real-space refinement in PHENIX for cryo-EM and crystallography
- (2018) Pavel V. Afonine et al. Acta Crystallographica Section D-Structural Biology
- Overview of refinement procedures within REFMAC5: utilizing data from different sources
- (2018) Oleg Kovalevskiy et al. Acta Crystallographica Section D-Structural Biology
- A Two-Phase Improved Correlation Method for Automatic Particle Selection in Cryo-EM
- (2017) Fa Zhang et al. IEEE-ACM Transactions on Computational Biology and Bioinformatics
- Architecture of eukaryotic mRNA 3′-end processing machinery
- (2017) Ana Casañal et al. SCIENCE
- High-Resolution Cryo-EM Maps and Models: A Crystallographer's Perspective
- (2017) Alexander Wlodawer et al. STRUCTURE
- Model-based local density sharpening of cryo-EM maps
- (2017) Arjen J Jakobi et al. eLife
- Recent developments in the CCP-EM software suite
- (2017) Tom Burnley et al. Acta Crystallographica Section D-Structural Biology
- `Atomic resolution': a badly abused term in structural biology
- (2017) Alexander Wlodawer et al. Acta Crystallographica Section D-Structural Biology
- AceDRG: a stereochemical description generator for ligands
- (2017) Fei Long et al. Acta Crystallographica Section D-Structural Biology
- Refinement of atomic models in high resolution EM reconstructions using Flex-EM and local assessment
- (2016) Agnel Praveen Joseph et al. METHODS
- 2.2 A resolution cryo-EM structure of -galactosidase in complex with a cell-permeant inhibitor
- (2015) A. Bartesaghi et al. SCIENCE
- Cryo-EM structure of the bacteriophage T4 portal protein assembly at near-atomic resolution
- (2015) Lei Sun et al. Nature Communications
- FEM: feature-enhanced map
- (2015) Pavel V. Afonine et al. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY
- Collaborative Computational Project for Electron cryo-Microscopy
- (2015) Chris Wood et al. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY
- Tools for macromolecular model building and refinement into electron cryo-microscopy reconstructions
- (2015) Alan Brown et al. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY
- Crystal structure refinement withSHELXL
- (2015) George M. Sheldrick Acta Crystallographica Section C-Structural Chemistry
- Conjoined Use of EM and NMR in RNA Structure Refinement
- (2015) Zhou Gong et al. PLoS One
- Beam-induced motion correction for sub-megadalton cryo-EM particles
- (2014) Sjors HW Scheres eLife
- Cryo-EM enters a new era
- (2014) Werner Kühlbrandt eLife
- Flexible torsion-angle noncrystallographic symmetry restraints for improved macromolecular structure refinement
- (2014) Jeffrey J. Headd et al. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY
- Conformation-independent structural comparison of macromolecules withProSMART
- (2014) Robert A. Nicholls et al. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY
- Model morphing and sequence assignment after molecular replacement
- (2013) Thomas C. Terwilliger et al. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY
- Likelihood-based classification of cryo-EM images using FREALIGN
- (2013) Dmitry Lyumkis et al. JOURNAL OF STRUCTURAL BIOLOGY
- Quantifying the local resolution of cryo-EM density maps
- (2013) Alp Kucukelbir et al. NATURE METHODS
- Automatic protein structure solution from weak X-ray data
- (2013) Pavol Skubák et al. Nature Communications
- Use of knowledge-based restraints inphenix.refineto improve macromolecular refinement at low resolution
- (2012) Jeffrey J. Headd et al. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY
- Low-resolution refinement tools inREFMAC5
- (2012) Robert A. Nicholls et al. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY
- Exploiting structure similarity in refinement: automated NCS and target-structure restraints inBUSTER
- (2012) Oliver S. Smart et al. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY
- RELION: Implementation of a Bayesian approach to cryo-EM structure determination
- (2012) Sjors H.W. Scheres JOURNAL OF STRUCTURAL BIOLOGY
- Linking Crystallographic Model and Data Quality
- (2012) P. A. Karplus et al. SCIENCE
- REFMAC5 for the refinement of macromolecular crystal structures
- (2011) Garib N. Murshudov et al. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY
- Overview of theCCP4 suite and current developments
- (2011) Martyn D. Winn et al. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY
- Electronic detectors for electron microscopy
- (2011) A. R. Faruqi et al. QUARTERLY REVIEWS OF BIOPHYSICS
- Features and development ofCoot
- (2010) P. Emsley et al. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY
- CHOYCE: a web server for constrained homology modelling with cryoEM maps
- (2010) Reda Rawi et al. BIOINFORMATICS
- Atomic model of an infectious rotavirus particle
- (2010) Ethan C Settembre et al. EMBO JOURNAL
- Super-resolution biomolecular crystallography with low-resolution data
- (2010) Gunnar F. Schröder et al. NATURE
- X-ray structure determination at low resolution
- (2009) Axel T. Brunger et al. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY
- Molecular replacement withMOLREP
- (2009) Alexei Vagin et al. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY
- Automatic multiple-zone rigid-body refinement with a large convergence radius
- (2009) Pavel V. Afonine et al. JOURNAL OF APPLIED CRYSTALLOGRAPHY
- Molecular dynamics flexible fitting: A practical guide to combine cryo-electron microscopy and X-ray crystallography
- (2009) Leonardo G. Trabuco et al. METHODS
- Flexible Fitting of Atomic Structures into Electron Microscopy Maps Using Molecular Dynamics
- (2008) Leonardo G. Trabuco et al. STRUCTURE
Create your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create NowAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started