GMPR: A robust normalization method for zero-inflated count data with application to microbiome sequencing data
出版年份 2018 全文链接
标题
GMPR: A robust normalization method for zero-inflated count data with application to microbiome sequencing data
作者
关键词
-
出版物
PeerJ
Volume 6, Issue -, Pages e4600
出版商
PeerJ
发表日期
2018-04-02
DOI
10.7717/peerj.4600
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Normalizing single-cell RNA sequencing data: challenges and opportunities
- (2017) Catalina A Vallejos et al. NATURE METHODS
- Human genetic variation and the gut microbiome in disease
- (2017) Andrew Brantley Hall et al. NATURE REVIEWS GENETICS
- Normalization and microbial differential abundance strategies depend upon data characteristics
- (2017) Sophie Weiss et al. Microbiome
- Balance Trees Reveal Microbial Niche Differentiation
- (2017) James T. Morton et al. mSystems
- Intricacies of assessing the human microbiome in epidemiologic studies
- (2016) Courtney K. Robinson et al. ANNALS OF EPIDEMIOLOGY
- Compositional data analysis of the microbiome: fundamentals, tools, and challenges
- (2016) Matthew C.B. Tsilimigras et al. ANNALS OF EPIDEMIOLOGY
- Large-scale benchmarking reveals false discoveries and count transformation sensitivity in 16S rRNA gene amplicon data analysis methods used in microbiome studies
- (2016) Jonathan Thorsen et al. Microbiome
- Comparing the normalization methods for the differential analysis of Illumina high-throughput RNA-Seq data
- (2015) Peipei Li et al. BMC BIOINFORMATICS
- Collecting Fecal Samples for Microbiome Analyses in Epidemiology Studies
- (2015) R. Sinha et al. CANCER EPIDEMIOLOGY BIOMARKERS & PREVENTION
- A fair comparison
- (2014) Paul I Costea et al. NATURE METHODS
- Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible
- (2014) Paul J. McMurdie et al. PLoS Computational Biology
- Variable selection for sparse Dirichlet-multinomial regression with an application to microbiome data analysis
- (2013) Jun Chen et al. Annals of Applied Statistics
- Differential abundance analysis for microbial marker-gene surveys
- (2013) Joseph N Paulson et al. NATURE METHODS
- Associating microbiome composition with environmental covariates using generalized UniFrac distances
- (2012) Jun Chen et al. BIOINFORMATICS
- A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis
- (2012) M.-A. Dillies et al. BRIEFINGS IN BIOINFORMATICS
- Linking Long-Term Dietary Patterns with Gut Microbial Enterotypes
- (2011) G. D. Wu et al. SCIENCE
- Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries
- (2011) Daniel Aird et al. GENOME BIOLOGY
- QIIME allows analysis of high-throughput community sequencing data
- (2010) J Gregory Caporaso et al. NATURE METHODS
- A scaling normalization method for differential expression analysis of RNA-seq data
- (2010) Mark D Robinson et al. GENOME BIOLOGY
- Differential expression analysis for sequence count data
- (2010) Simon Anders et al. GENOME BIOLOGY
- edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
- (2009) M. D. Robinson et al. BIOINFORMATICS
- RNA-Seq: a revolutionary tool for transcriptomics
- (2008) Zhong Wang et al. NATURE REVIEWS GENETICS
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started