Distribution of bacterial communities along the spatial and environmental gradients from Bohai Sea to northern Yellow Sea

Revised phylogeny of Bacteroidetes and proposal of sixteen new taxa and two new combinations including Rhodothermaeota phyl. nov.

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Depth shapes α- and β-diversities of microbial eukaryotes in surficial sediments of coastal ecosystems

(2015) Jun Gong et al.   ENVIRONMENTAL MICROBIOLOGY

The hidden seasonality of the rare biosphere in coastal marine bacterioplankton

(2015) Laura Alonso-Sáez et al.   ENVIRONMENTAL MICROBIOLOGY

Bacterial biogeography in the coastal waters of northern Zhejiang, East China Sea is highly controlled by spatially structured environmental gradients

(2015) Kai Wang et al.   ENVIRONMENTAL MICROBIOLOGY

Global diversity and biogeography of deep-sea pelagic prokaryotes

(2015) Guillem Salazar et al.   ISME Journal

Phylogenetic shifts of bacterioplankton community composition along the Pearl Estuary: the potential impact of hypoxia and nutrients

(2015) Jiwen Liu et al.   Frontiers in Microbiology

Biogeography of the Sediment Bacterial Community Responds to a Nitrogen Pollution Gradient in the East China Sea

(2014) Jinbo Xiong et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microbial biogeography: the end of the ubiquitous dispersal hypothesis?

(2014) Christopher J. van der Gast   ENVIRONMENTAL MICROBIOLOGY

Biogeography of planktonic and benthic cyanobacteria in coastal waters of the Big Island, Hawai'i

(2014) Samuel D. Chamberlain et al.   FEMS MICROBIOLOGY ECOLOGY

Spatial Diversity of Bacterioplankton Communities in Surface Water of Northern South China Sea

(2014) Jialin Li et al.   PLoS One

Suspended sediment monitoring and assessment for Yellow River estuary from Landsat TM and ETM+ imagery

(2014) Minwei Zhang et al.   REMOTE SENSING OF ENVIRONMENT

Seasonal changes in picocyanobacterial diversity as revealed by pyrosequencing in temperate waters of the East China Sea and the East Sea

(2013) DH Choi et al.   AQUATIC MICROBIAL ECOLOGY

Metabolic flexibility of enigmatic SAR324 revealed through metagenomics and metatranscriptomics

(2013) Cody S. Sheik et al.   ENVIRONMENTAL MICROBIOLOGY

Molecular Detection of Candidatus Scalindua pacifica and Environmental Responses of Sediment Anammox Bacterial Community in the Bohai Sea, China

(2013) Hongyue Dang et al.   PLoS One

Biogeography of Deep-Sea Benthic Bacteria at Regional Scale (LTER HAUSGARTEN, Fram Strait, Arctic)

(2013) Marianne Jacob et al.   PLoS One

The role of planktonicFlavobacteriain processing algal organic matter in coastal East Antarctica revealed using metagenomics and metaproteomics

(2012) Timothy J. Williams et al.   ENVIRONMENTAL MICROBIOLOGY

Bacterial diversity, community structure and potential growth rates along an estuarine salinity gradient

(2012) Barbara J Campbell et al.   ISME Journal

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

(2012) Nicholas A Bokulich et al.   NATURE METHODS

Marine Microbes See a Sea of Gradients

(2012) R. Stocker   SCIENCE

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Seasonal change in the abundance of Synechococcus and multiple distinct phylotypes in Monterey Bay determined by rbcL and narB quantitative PCR

(2011) Ryan W. Paerl et al.   ENVIRONMENTAL MICROBIOLOGY

Microbial diversity and stratification of South Pacific abyssal marine sediments

(2011) Alan M. Durbin et al.   ENVIRONMENTAL MICROBIOLOGY

Spatial variability overwhelms seasonal patterns in bacterioplankton communities across a river to ocean gradient

(2011) Caroline S Fortunato et al.   ISME Journal

The Western English Channel contains a persistent microbial seed bank

(2011) J Gregory Caporaso et al.   ISME Journal

Global Patterns of Bacterial Beta-Diversity in Seafloor and Seawater Ecosystems

(2011) Lucie Zinger et al.   PLoS One

Drivers of bacterial  -diversity depend on spatial scale

(2011) J. B. H. Martiny et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Local and regional factors influencing bacterial community assembly

(2011) Eva S. Lindström et al.   Environmental Microbiology Reports

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Remote-sensing reflectance characteristics of highly turbid estuarine waters – a comparative experiment of the Yangtze River and the Yellow River

(2010) Fang Shen et al.   INTERNATIONAL JOURNAL OF REMOTE SENSING

Vertical stratification of microbial communities in the Red Sea revealed by 16S rDNA pyrosequencing

(2010) Pei-Yuan Qian et al.   ISME Journal

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Seasonality and vertical structure of microbial communities in an ocean gyre

(2009) Alexander H Treusch et al.   ISME Journal

Chemical and physical fronts in the Bohai, Yellow and East China seas

(2009) Chen-Tung Arthur Chen   JOURNAL OF MARINE SYSTEMS

The Microbial Engines That Drive Earth's Biogeochemical Cycles

(2008) P. G. Falkowski et al.   SCIENCE