Novel Sequence Features of DNA Repair Genes/Proteins from Deinococcus Species Implicated in Protection from Oxidatively Generated Damage

Oxidative stress, protein damage and repair in bacteria

(2017) Benjamin Ezraty et al.   NATURE REVIEWS MICROBIOLOGY

Novel molecular, structural and evolutionary characteristics of the phosphoketolases from bifidobacteria and Coriobacteriales

(2017) Radhey S. Gupta et al.   PLoS One

Across the tree of life, radiation resistance is governed by antioxidant Mn2+, gauged by paramagnetic resonance

(2017) Ajay Sharma et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Protein damage, radiation sensitivity and aging

(2016) Miroslav Radman   DNA REPAIR

Cell cycle progression inCaulobacterrequires a nucleoid-associated protein with high AT sequence recognition

(2016) Dante P. Ricci et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mechanism for accurate, protein-assisted DNA annealing byDeinococcus radioduransDdrB

(2016) Seiji N. Sugiman-Marangos et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification of distinctive molecular traits that are characteristic of the phylum “Deinococcus-Thermus” and distinguish its main constituent groups

(2016) Jonathan Ho et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

A Decade of Biochemical and Structural Studies of the DNA Repair Machinery of Deinococcus radiodurans: Major Findings, Functional and Mechanistic Insight and Challenges

(2016) Joanna Timmins et al.   Computational and Structural Biotechnology Journal

The power of operon rearrangements for predicting functional associations

(2015) Gabriel Moreno-Hagelsieb   Computational and Structural Biotechnology Journal

Balancing oxidative protein folding: The influences of reducing pathways on disulfide bond formation

(2014) Kerstin Kojer et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

PprA, a pleiotropic protein for radioresistance, works through DNA gyrase and shows cellular dynamics during postirradiation recovery in Deinococcus radiodurans

(2014) SWATHI KOTA et al.   JOURNAL OF GENETICS

The RCSB Protein Data Bank: views of structural biology for basic and applied research and education

(2014) Peter W. Rose et al.   NUCLEIC ACIDS RESEARCH

STRING v10: protein–protein interaction networks, integrated over the tree of life

(2014) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Signature Protein of the PVC Superphylum

(2013) Ilias Lagkouvardos et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Crystal structure of the DdrB/ssDNA complex from Deinococcus radiodurans reveals a DNA binding surface involving higher-order oligomeric states

(2013) Seiji N. Sugiman-Marangos et al.   NUCLEIC ACIDS RESEARCH

Scalable web services for the PSIPRED Protein Analysis Workbench

(2013) Daniel W. A. Buchan et al.   NUCLEIC ACIDS RESEARCH

DOOR 2.0: presenting operons and their functions through dynamic and integrated views

(2013) Xizeng Mao et al.   NUCLEIC ACIDS RESEARCH

DdrA, DdrD, and PprA: Components of UV and Mitomycin C Resistance in Deinococcus radiodurans R1

(2013) Kathiresan Selvam et al.   PLoS One

Structural and Mechanistic Insight into DNA Unwinding by Deinococcus radiodurans UvrD

(2013) Meike Stelter et al.   PLoS One

Biology of Extreme Radiation Resistance: The Way of Deinococcus radiodurans

(2013) A. Krisko et al.   Cold Spring Harbor Perspectives in Biology

Structure and mechanism of the UvrA–UvrB DNA damage sensor

(2012) Danaya Pakotiprapha et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

UV damage endonuclease employs a novel dual-dinucleotide flipping mechanism to recognize different DNA lesions

(2012) Elisabeth M. Meulenbroek et al.   NUCLEIC ACIDS RESEARCH

Structure and Function of DsbA, a Key Bacterial Oxidative Folding Catalyst

(2011) Stephen R. Shouldice et al.   ANTIOXIDANTS & REDOX SIGNALING

Improving the Physical Realism and Structural Accuracy of Protein Models by a Two-Step Atomic-Level Energy Minimization

(2011) Dong Xu et al.   BIOPHYSICAL JOURNAL

Role of the insertion domain and the zinc-finger motif of Escherichia coli UvrA in damage recognition and ATP hydrolysis

(2011) Koen Wagner et al.   DNA REPAIR

Analysis and Functional Prediction of Reactive Cysteine Residues

(2011) Stefano M. Marino et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Oxidative Stress Resistance in Deinococcus radiodurans

(2011) D. Slade et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Structure of UvrA nucleotide excision repair protein in complex with modified DNA

(2011) Marcin Jaciuk et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Evaluation of the role of enzymatic and nonenzymatic antioxidant systems in the radiation resistance of Deinococcus

(2010) Ravindranath Shashidhar et al.   CANADIAN JOURNAL OF MICROBIOLOGY

Structure and Protein-Protein Interaction Studies on Chlamydia trachomatis Protein CT670 (YscO Homolog)

(2010) E. Lorenzini et al.   JOURNAL OF BACTERIOLOGY

A domain insertion in Escherichia coli GyrB adopts a novel fold that plays a critical role in gyrase function

(2010) Allyn J. Schoeffler et al.   NUCLEIC ACIDS RESEARCH

Small-Molecule Antioxidant Proteome-Shields in Deinococcus radiodurans

(2010) Michael J. Daly et al.   PLoS One

Mechanisms of protein oligomerization, the critical role of insertions and deletions in maintaining different oligomeric states

(2010) K. Hashimoto et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Protein damage and death by radiation in Escherichia coli and Deinococcus radiodurans

(2010) A. Krisko et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rising from the Ashes: DNA Repair in Deinococcus radiodurans

(2010) Michael M. Cox et al.   PLoS Genetics

DdrB Protein, an AlternativeDeinococcus radioduransSSB Induced by Ionizing Radiation

(2009) Cédric A. Norais et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Conserved inserts in the Hsp60 (GroEL) and Hsp70 (DnaK) proteins are essential for cellular growth

(2009) Bhag Singh et al.   MOLECULAR GENETICS AND GENOMICS

A new perspective on radiation resistance based on Deinococcus radiodurans

(2009) Michael J. Daly   NATURE REVIEWS MICROBIOLOGY

Structural and Mutational Analyses of Deinococcus radiodurans UvrA2 Provide Insight into DNA Binding and Damage Recognition by UvrAs

(2009) Joanna Timmins et al.   STRUCTURE

Alliance of Proteomics and Genomics to Unravel the Specificities of Sahara Bacterium Deinococcus deserti

(2009) Arjan de Groot et al.   PLoS Genetics

Deinococcus radiodurans: What Belongs to the Survival Kit?

(2008) Melanie Blasius et al.   CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY

The disulfide bond formation (Dsb) system

(2008) K ITO et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Crystal Structure of Bacillus stearothermophilus UvrA Provides Insight into ATP-Modulated Dimerization, UvrB Interaction, and DNA Binding

(2008) Danaya Pakotiprapha et al.   MOLECULAR CELL

Built-in loops allow versatility in domain-domain interactions: Lessons from self-interacting domains

(2008) E. Akiva et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bacterial species exhibit diversity in their mechanisms and capacity for protein disulfide bond formation

(2008) R. J. Dutton et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structure and mechanisms of the DsbB–DsbA disulfide bond generation machine

(2007) Kenji Inaba et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

QMEAN: A comprehensive scoring function for model quality assessment

(2007) Pascal Benkert et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS