Vertebrate Genome Evolution in the Light of Fish Cytogenomics and rDNAomics

MSDB: A Comprehensive Database of Simple Sequence Repeats

(2017) Akshay Kumar Avvaru et al.   Genome Biology and Evolution

Similar Ratios of Introns to Intergenic Sequence across Animal Genomes

(2017) Warren R. Francis et al.   Genome Biology and Evolution

Less effective selection leads to larger genomes

(2017) Tristan Lefébure et al.   GENOME RESEARCH

The Nucleolus: In Genome Maintenance and Repair

(2017) Maria Tsekrekou et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

“Holostei versus Halecostomi” Problem: Insight from Cytogenetics of Ancient Nonteleost Actinopterygian Fish, Bowfin Amia calva

(2017) Zuzana Majtánová et al.   JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION

B-chrom: a database on B-chromosomes of plants, animals and fungi

(2017) Ugo D'Ambrosio et al.   NEW PHYTOLOGIST

Ensembl 2018

(2017) Daniel R Zerbino et al.   NUCLEIC ACIDS RESEARCH

Ribosomal DNA copy number loss and sequence variation in cancer

(2017) Baoshan Xu et al.   PLoS Genetics

Loss of the chromatin modifier Kdm2aa causes BrafV600E-independent spontaneous melanoma in zebrafish

(2017) Catherine M. Scahill et al.   PLoS Genetics

Ribosomal DNA copy number amplification and loss in human cancers is linked to tumor genetic context, nucleolus activity, and proliferation

(2017) Meng Wang et al.   PLoS Genetics

Chromosomal Evolution in Lower Vertebrates: Sex Chromosomes in Neotropical Fishes

(2017) Marcelo de Bello Cioffi et al.   Genes

Next Generation Sequencing of Chromosome-Specific Libraries Sheds Light on Genome Evolution in Paleotetraploid Sterlet (Acipenser ruthenus)

(2017) Daria Andreyushkova et al.   Genes

The draft genome of blunt snout bream (Megalobrama amblycephala) reveals the development of intermuscular bone and adaptation to herbivorous diet

(2017) Han Liu et al.   GigaScience

Whole genome sequencing data and de novo draft assemblies for 66 teleost species

(2017) Martin Malmstrøm et al.   Scientific Data

High-throughput analysis unveils a highly shared satellite DNA library among three species of fish genus Astyanax

(2017) Duílio M. Z. de A. Silva et al.   Scientific Reports

Evolution of bird genomes-a transposon's-eye view

(2016) Aurélie Kapusta et al.   Annals of the New York Academy of Sciences

On the genome base composition of teleosts: the effect of environment and lifestyle

(2016) Andrea Tarallo et al.   BMC GENOMICS

Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database

(2016) Jeremy Pasquier et al.   BMC GENOMICS

B chromosomes: from cytogenetics to systems biology

(2016) Guilherme T. Valente et al.   CHROMOSOMA

Salmonid chromosome evolution as revealed by a novel method for comparing RADseq linkage maps

(2016) Ben J. G. Sutherland et al.   Genome Biology and Evolution

Finding clues to the riddle of sex determination in zebrafish

(2016) A Nagabhushana et al.   JOURNAL OF BIOSCIENCES

Genome Compositional Organization in Gars Shows More Similarities to Mammals than to Other Ray-Finned Fish

(2016) Radka Symonová et al.   JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION

Fish, genes and genomes: contributions to ecology, evolution and management

(2016) G. R. Carvalho et al.   JOURNAL OF FISH BIOLOGY

The Evolutionary Dynamics of Ribosomal Genes, Histone H3, and Transposable Rex Elements in the Genome of Atlantic Snappers

(2016) Gideão Wagner Werneck Félix da Costa et al.   JOURNAL OF HEREDITY

Unusual Diversity of Myoglobin Genes in the Lungfish

(2016) Jonas Koch et al.   MOLECULAR BIOLOGY AND EVOLUTION

Two adjacent inversions maintain genomic differentiation between migratory and stationary ecotypes of Atlantic cod

(2016) Tina Graceline Kirubakaran et al.   MOLECULAR ECOLOGY

Standing chromosomal variation in Lake Whitefish species pairs: the role of historical contingency and relevance for speciation

(2016) Anne-Marie Dion-Côté et al.   MOLECULAR ECOLOGY

The Atlantic salmon genome provides insights into rediploidization

(2016) Sigbjørn Lien et al.   NATURE

The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons

(2016) Ingo Braasch et al.   NATURE GENETICS

Asexual Reproduction Does Not Apparently Increase the Rate of Chromosomal Evolution: Karyotype Stability in Diploid and Triploid Clonal Hybrid Fish (Cobitis, Cypriniformes, Teleostei)

(2016) Zuzana Majtánová et al.   PLoS One

Uncovering the Ancestry of B Chromosomes in Moenkhausia sanctaefilomenae (Teleostei, Characidae)

(2016) Ricardo Utsunomia et al.   PLoS One

The channel catfish genome sequence provides insights into the evolution of scale formation in teleosts

(2016) Zhanjiang Liu et al.   Nature Communications

Fish Karyome version 2.1: a chromosome database of fishes and other aquatic organisms

(2016) Naresh Sahebrao Nagpure et al.   Database-The Journal of Biological Databases and Curation

The genome of the largest bony fish, ocean sunfish (Mola mola), provides insights into its fast growth rate

(2016) Hailin Pan et al.   GigaScience

High-quality genome assembly of channel catfish, Ictalurus punctatus

(2016) Xiaohui Chen et al.   GigaScience

Do larger genomes contain more diverse transposable elements?

(2015) Tyler A Elliott et al.   BMC EVOLUTIONARY BIOLOGY

Repetitive sequences: the hidden diversity of heterochromatin in prochilodontid fish

(2015) Maria L. Terencio et al.   Comparative Cytogenetics

Segmenting the Human Genome into Isochores

(2015) Paolo Cozzi et al.   Evolutionary Bioinformatics

Assembly: a resource for assembled genomes at NCBI

(2015) Paul A. Kitts et al.   NUCLEIC ACIDS RESEARCH

FMiR: A Curated Resource of Mitochondrial DNA Information for Fish

(2015) Naresh Sahebrao Nagpure et al.   PLoS One

Concerted copy number variation balances ribosomal DNA dosage in human and mouse genomes

(2015) John G. Gibbons et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Reproductive isolation in a nascent species pair is associated with aneuploidy in hybrid offspring

(2015) A.-M. Dion-Cote et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Genome Assembly Improvement and Mapping Convergently Evolved Skeletal Traits in Sticklebacks with Genotyping-by-Sequencing

(2015) Andrew M. Glazer et al.   G3-Genes Genomes Genetics

Segmental paleotetraploidy revealed in sterlet (Acipenser ruthenus) genome by chromosome painting

(2015) Svetlana A. Romanenko et al.   Molecular Cytogenetics

The Genome 10K Project: A Way Forward

(2015) Klaus-Peter Koepfli et al.   Annual Review of Animal Biosciences

Major issues in the origins of ray-finned fish (Actinopterygii) biodiversity

(2014) Lauren C. Sallan   BIOLOGICAL REVIEWS

Comparative cytogenomics of poultry: mapping of single gene and repeat loci in the Japanese quail (Coturnix japonica)

(2014) Marla C. McPherson et al.   CHROMOSOME RESEARCH

Unusual Dispersion of Histone Repeats on the Whole Chromosomal Complement and Their Colocalization with Ribosomal Genes in Rachycentron canadum (Rachycentridae, Perciformes)

(2014) Gideão W.W.F. Costa et al.   CYTOGENETIC AND GENOME RESEARCH

Whole-genome duplication in teleost fishes and its evolutionary consequences

(2014) Stella M. K. Glasauer et al.   MOLECULAR GENETICS AND GENOMICS

The genomic substrate for adaptive radiation in African cichlid fish

(2014) David Brawand et al.   NATURE

The Genome and Linkage Map of the Northern Pike (Esox lucius): Conserved Synteny Revealed between the Salmonid Sister Group and the Neoteleostei

(2014) Eric B. Rondeau et al.   PLoS One

Ribosomal RNA gene repeats, their stability and cellular senescence

(2014) Takehiko KOBAYASHI   PROCEEDINGS OF THE JAPAN ACADEMY SERIES B-PHYSICAL AND BIOLOGICAL SCIENCES

The cavefish genome reveals candidate genes for eye loss

(2014) Suzanne E. McGaugh et al.   Nature Communications

Genes on B chromosomes of vertebrates

(2014) Alexey I Makunin et al.   Molecular Cytogenetics

Genome differentiation in a species pair of coregonine fishes: an extremely rapid speciation driven by stress-activated retrotransposons mediating extensive ribosomal DNA multiplications

(2013) Radka Symonová et al.   BMC EVOLUTIONARY BIOLOGY

FishMicrosat: a microsatellite database of commercially important fishes and shellfishes of the Indian subcontinent

(2013) Naresh Nagpure et al.   BMC GENOMICS

The nucleolus—guardian of cellular homeostasis and genome integrity

(2013) Ingrid Grummt   CHROMOSOMA

Genome Duplication in Early Vertebrates: Insights from Agnathan Cytogenetics

(2013) V. Caputo Barucchi et al.   CYTOGENETIC AND GENOME RESEARCH

Beyond the zebrafish: diverse fish species for modeling human disease

(2013) M. Schartl   Disease Models & Mechanisms

The zebrafish reference genome sequence and its relationship to the human genome

(2013) Kerstin Howe et al.   NATURE

The genome of the platyfish, Xiphophorus maculatus, provides insights into evolutionary adaptation and several complex traits

(2013) Manfred Schartl et al.   NATURE GENETICS

Evolutionary dynamics of rRNA gene clusters in cichlid fish

(2012) Rafael T Nakajima et al.   BMC EVOLUTIONARY BIOLOGY

A high-resolution map of the Nile tilapia genome: a resource for studying cichlids and other percomorphs

(2012) Richard Guyon et al.   BMC GENOMICS

Integrating cytogenetics and genomics in comparative evolutionary studies of cichlid fish

(2012) Juliana Mazzuchelli et al.   BMC GENOMICS

Identifying parental chromosomes and genomic rearrangements in animal hybrid complexes of species with small genome size using Genomic In Situ Hybridization (GISH)

(2012) Massimiliano Rampin et al.   Comparative Cytogenetics

Formation of nuclear heterochromatin

(2012) Claudio Guetg et al.   Epigenetics

Hooked! Modeling human disease in zebrafish

(2012) Cristina Santoriello et al.   JOURNAL OF CLINICAL INVESTIGATION

KCTD13 is a major driver of mirrored neuroanatomical phenotypes of the 16p11.2 copy number variant

(2012) Christelle Golzio et al.   NATURE

Mutations in ISPD cause Walker-Warburg syndrome and defective glycosylation of α-dystroglycan

(2012) Tony Roscioli et al.   NATURE GENETICS

CCDC103 mutations cause primary ciliary dyskinesia by disrupting assembly of ciliary dynein arms

(2012) Jennifer R Panizzi et al.   NATURE GENETICS

B-Chromosome Ribosomal DNA Is Functional in the Grasshopper Eyprepocnemis plorans

(2012) Mercedes Ruiz-Estévez et al.   PLoS One

Multiple Sex-Associated Regions and a Putative Sex Chromosome in Zebrafish Revealed by RAD Mapping and Population Genomics

(2012) Jennifer L. Anderson et al.   PLoS One

Why are there so few fish in the sea?

(2012) G. Carrete Vega et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Atlas of Cytogenomics in Oncology and Hematology: a Platform-Neutral Clinical Cancer Genomics Database

(2012) Bixia Xiang et al.   Cancer Genetics

Zebrafish Models for Cancer

(2011) Shu Liu et al.   Annual Review of Pathology-Mechanisms of Disease

The rainbow trout liver cancer model: Response to environmental chemicals and studies on promotion and chemoprevention

(2011) David E. Williams   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY C-TOXICOLOGY & PHARMACOLOGY

Isolation of a Cancer-Associated Microchromosome in the Sperm-Dependent Parthenogen Poecilia formosa

(2011) D.K. Lamatsch et al.   CYTOGENETIC AND GENOME RESEARCH

Genome duplication in amphibians and fish: an extended synthesis

(2011) B. K. Mable et al.   JOURNAL OF ZOOLOGY

The histone methyltransferase SETDB1 is recurrently amplified in melanoma and accelerates its onset

(2011) Craig J. Ceol et al.   NATURE

An SNP-Based Linkage Map for Zebrafish Reveals Sex Determination Loci

(2011) Kevin M. Bradley et al.   G3-Genes Genomes Genetics

Genetic population structure of sympatric and allopatric populations of Baltic ciscoes (Coregonus albula complex, Teleostei, Coregonidae)

(2010) Thomas Mehner et al.   BMC EVOLUTIONARY BIOLOGY

Chromosome spreading of associated transposable elements and ribosomal DNA in the fish Erythrinus erythrinus. Implications for genome change and karyoevolution in fish

(2010) Marcelo B Cioffi et al.   BMC EVOLUTIONARY BIOLOGY

Comparative genomics in teleost species: Knowledge transfer by linking the genomes of model and non-model fish species

(2010) Elena Sarropoulou et al.   Comparative Biochemistry and Physiology D-Genomics & Proteomics

Genome Biology of the Cyclostomes and Insights into the Evolutionary Biology of Vertebrate Genomes

(2010) J. J. Smith et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

Cytogenomics of cancers: From chromosome to sequence

(2010) Alain Bernheim   Molecular Oncology

Abundance of Ribosomal RNA Gene Copies Maintains Genome Integrity

(2010) S. Ide et al.   SCIENCE

Evolution of adaptive immune recognition in jawless vertebrates

(2010) Nil Ratan Saha et al.   SEMINARS IN IMMUNOLOGY

FishMap Zv8 Update—A Genomic Regulatory Map of Zebrafish

(2010) Deeksha Bhartiya et al.   Zebrafish

Assignment of Atlantic salmon (Salmo salar) linkage groups to specific chromosomes: Conservation of large syntenic blocks corresponding to whole chromosome arms in rainbow trout (Oncorhynchus mykiss)

(2009) Ruth B Phillips et al.   BMC GENETICS

Patterns of genome size diversity in the ray-finned fishes

(2009) Emily M. Smith et al.   HYDROBIOLOGIA

Population size and genome size in fishes: a closer look

(2008) T. Ryan Gregory et al.   GENOME

The origin and evolution of a unisexual hybrid: Poecilia formosa

(2008) K.P Lampert et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Evolutionary mutant models for human disease

(2008) R. Craig Albertson et al.   TRENDS IN GENETICS