The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons
出版年份 2016 全文链接
标题
The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons
作者
关键词
-
出版物
NATURE GENETICS
Volume 48, Issue 4, Pages 427-437
出版商
Springer Nature
发表日期
2016-03-08
DOI
10.1038/ng.3526
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注意：仅列出部分参考文献，下载原文获取全部文献信息。- A comprehensive analysis of teleost MHC class I sequences
- (2015) Unni Grimholt et al. BMC EVOLUTIONARY BIOLOGY
- A Platform for Rapid Exploration of Aging and Diseases in a Naturally Short-Lived Vertebrate
- (2015) Itamar Harel et al. CELL
- Comparative Analysis of Transposable Elements Highlights Mobilome Diversity and Evolution in Vertebrates
- (2015) Domitille Chalopin et al. Genome Biology and Evolution
- The sea lamprey meiotic map improves resolution of ancient vertebrate genome duplications
- (2015) Jeramiah J. Smith et al. GENOME RESEARCH
- miRNA Nomenclature: A View Incorporating Genetic Origins, Biosynthetic Pathways, and Sequence Variants
- (2015) T. Desvignes et al. TRENDS IN GENETICS
- RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
- (2014) Alexandros Stamatakis BIOINFORMATICS
- Major issues in the origins of ray-finned fish (Actinopterygii) biodiversity
- (2014) Lauren C. Sallan BIOLOGICAL REVIEWS
- Genetic variation at aryl hydrocarbon receptor (AHR) loci in populations of Atlantic killifish (Fundulus heteroclitus) inhabiting polluted and reference habitats
- (2014) Adam M Reitzel et al. BMC EVOLUTIONARY BIOLOGY
- Connectivity of vertebrate genomes: Paired-related homeobox (Prrx) genes in spotted gar, basal teleosts, and tetrapods
- (2014) Ingo Braasch et al. COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY C-TOXICOLOGY & PHARMACOLOGY
- Transgenic fish systems and their application in ecotoxicology
- (2014) Okhyun Lee et al. CRITICAL REVIEWS IN TOXICOLOGY
- The POU-er of gene nomenclature
- (2014) S. R. Frankenberg et al. DEVELOPMENT
- The MHC class I genes of zebrafish
- (2014) Hayley Dirscherl et al. DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY
- The genome ofCallorhinchusand the fossil record: a new perspective on SCPP gene evolution in gnathostomes
- (2014) Bettina Ryll et al. EVOLUTION & DEVELOPMENT
- Getting more for your marrow: Boosting hematopoietic stem cell numbers with PGE2
- (2014) Elliott J. Hagedorn et al. EXPERIMENTAL CELL RESEARCH
- Expanding the annotation of zebrafish microRNAs based on small RNA sequencing
- (2014) Thomas Desvignes et al. GENE
- A new model army: Emerging fish models to study the genomics of vertebrate Evo-Devo
- (2014) Ingo Braasch et al. JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION
- The Circadian Clock of Teleost Fish: A Comparative Analysis Reveals Distinct Fates for Duplicated Genes
- (2014) Jessica Toloza-Villalobos et al. JOURNAL OF MOLECULAR EVOLUTION
- Elephant shark genome provides unique insights into gnathostome evolution
- (2014) Byrappa Venkatesh et al. NATURE
- Deep conservation of wrist and digit enhancers in fish
- (2014) Andrew R. Gehrke et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Immunity and Immunopathology in the Tuberculous Granuloma
- (2014) Antonio J. Pagán et al. Cold Spring Harbor Perspectives in Medicine
- Comprehensive analysis of MHC class II genes in teleost fish genomes reveals dispensability of the peptide-loading DM system in a large part of vertebrates
- (2013) Johannes M Dijkstra et al. BMC EVOLUTIONARY BIOLOGY
- The vertebrate ancestral repertoire of visual opsins, transducin alpha subunits and oxytocin/vasopressin receptors was established by duplication of their shared genomic region in the two rounds of early vertebrate genome duplications
- (2013) David Lagman et al. BMC EVOLUTIONARY BIOLOGY
- Genome editing with RNA-guided Cas9 nuclease in Zebrafish embryos
- (2013) Nannan Chang et al. CELL RESEARCH
- Coelacanth genomes reveal signatures for evolutionary transition from water to land
- (2013) M. Nikaido et al. GENOME RESEARCH
- Characterization of the Z lineage Major histocompatability complex class I genes in zebrafish
- (2013) Hayley Dirscherl et al. IMMUNOGENETICS
- SCPP genes in the coelacanth: Tissue mineralization genes shared by sarcopterygians
- (2013) Kazuhiko Kawasaki et al. JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION
- A systematic genome-wide analysis of zebrafish protein-coding gene function
- (2013) Ross N. W. Kettleborough et al. NATURE
- The African coelacanth genome provides insights into tetrapod evolution
- (2013) Chris T. Amemiya et al. NATURE
- Efficient genome editing in zebrafish using a CRISPR-Cas system
- (2013) Woong Y Hwang et al. NATURE BIOTECHNOLOGY
- Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution
- (2013) Jeramiah J Smith et al. NATURE GENETICS
- A Phylogenomic Perspective on the Radiation of Ray-Finned Fishes Based upon Targeted Sequencing of Ultraconserved Elements (UCEs)
- (2013) Brant C. Faircloth et al. PLoS One
- A Switch Between Topological Domains Underlies HoxD Genes Collinearity in Mouse Limbs
- (2013) G. Andrey et al. SCIENCE
- Retinoid signaling in control of progenitor cell differentiation during mouse development
- (2013) Gregg Duester SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY
- PhyloBayes MPI: Phylogenetic Reconstruction with Infinite Mixtures of Profiles in a Parallel Environment
- (2013) Nicolas Lartillot et al. SYSTEMATIC BIOLOGY
- The origin of the tetrapod limb: from expeditions to enhancers
- (2013) Igor Schneider et al. TRENDS IN GENETICS
- Rates of speciation and morphological evolution are correlated across the largest vertebrate radiation
- (2013) Daniel L. Rabosky et al. Nature Communications
- Clustering of Tissue-Specific Sub-TADs Accompanies the Regulation of HoxA Genes in Developing Limbs
- (2013) Soizik Berlivet et al. PLoS Genetics
- The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage
- (2013) H Bradley Shaffer et al. GENOME BIOLOGY
- Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels
- (2012) Marcel H. Schulz et al. BIOINFORMATICS
- An Independent Genome Duplication Inferred from Hox Paralogs in the American Paddlefish—A Representative Basal Ray-Finned Fish and Important Comparative Reference
- (2012) Karen D. Crow et al. Genome Biology and Evolution
- Genomicus: five genome browsers for comparative genomics in eukaryota
- (2012) Alexandra Louis et al. NUCLEIC ACIDS RESEARCH
- Ensembl 2013
- (2012) Paul Flicek et al. NUCLEIC ACIDS RESEARCH
- Resolution of ray-finned fish phylogeny and timing of diversification
- (2012) T. J. Near et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- ViennaRNA Package 2.0
- (2011) Ronny Lorenz et al. Algorithms for Molecular Biology
- MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects
- (2011) Carson Holt et al. BMC BIOINFORMATICS
- A Regulatory Archipelago Controls Hox Genes Transcription in Digits
- (2011) Thomas Montavon et al. CELL
- Genome Evolution and Meiotic Maps by Massively Parallel DNA Sequencing: Spotted Gar, an Outgroup for the Teleost Genome Duplication
- (2011) Angel Amores et al. GENETICS
- Opsin gene duplication and divergence in ray-finned fish
- (2011) Diana J. Rennison et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Full-length transcriptome assembly from RNA-Seq data without a reference genome
- (2011) Manfred G Grabherr et al. NATURE BIOTECHNOLOGY
- Genomicus: a database and a browser to study gene synteny in modern and ancestral genomes
- (2010) M. Muffato et al. BIOINFORMATICS
- The dynamic TCRδ: TCRδ chains in the amphibian Xenopus tropicalis utilize antibody-like V genes
- (2010) Zuly E. Parra et al. EUROPEAN JOURNAL OF IMMUNOLOGY
- Evolution of MicroRNAs and the Diversification of Species
- (2010) Yong-Hwee E. Loh et al. Genome Biology and Evolution
- Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence
- (2010) E. Berezikov et al. GENOME RESEARCH
- Parallel Retention of Pdx2 Genes in Cartilaginous Fish and Coelacanths
- (2010) J. F. Mulley et al. MOLECULAR BIOLOGY AND EVOLUTION
- IgT, a primitive immunoglobulin class specialized in mucosal immunity
- (2010) Yong-An Zhang et al. NATURE IMMUNOLOGY
- miRBase: integrating microRNA annotation and deep-sequencing data
- (2010) A. Kozomara et al. NUCLEIC ACIDS RESEARCH
- High-quality draft assemblies of mammalian genomes from massively parallel sequence data
- (2010) S. Gnerre et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Differential expression analysis for sequence count data
- (2010) Simon Anders et al. GENOME BIOLOGY
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- The SCPP gene repertoire in bony vertebrates and graded differences in mineralized tissues
- (2009) Kazuhiko Kawasaki DEVELOPMENT GENES AND EVOLUTION
- The deep evolution of metazoan microRNAs
- (2009) Benjamin M. Wheeler et al. EVOLUTION & DEVELOPMENT
- Automated identification of conserved synteny after whole-genome duplication
- (2009) J. M. Catchen et al. GENOME RESEARCH
- Circos: An information aesthetic for comparative genomics
- (2009) M. Krzywinski et al. GENOME RESEARCH
- The oldest articulated osteichthyan reveals mosaic gnathostome characters
- (2009) Min Zhu et al. NATURE
- Origin and evolution of the adaptive immune system: genetic events and selective pressures
- (2009) Martin F. Flajnik et al. NATURE REVIEWS GENETICS
- Consequences of Lineage-Specific Gene Loss on Functional Evolution of Surviving Paralogs: ALDH1A and Retinoic Acid Signaling in Vertebrate Genomes
- (2009) Cristian Cañestro et al. PLoS Genetics
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- Rapidly evolving fish genomes and teleost diversity
- (2008) Vydianathan Ravi et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
- Form, function and phylogenetics of NITRs in bony fish
- (2008) Jeffrey A. Yoder DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY
- EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates
- (2008) A. J. Vilella et al. GENOME RESEARCH
- A Bony Fish Immunological Receptor of the NITR Multigene Family Mediates Allogeneic Recognition
- (2008) John P. Cannon et al. IMMUNITY
- Comparative Analysis of Period Genes in Teleost Fish Genomes
- (2008) Han Wang JOURNAL OF MOLECULAR EVOLUTION
- Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals
- (2008) Andrew Grimson et al. NATURE
- Evolutionary mutant models for human disease
- (2008) R. Craig Albertson et al. TRENDS IN GENETICS
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