Core versus diet-associated and postprandial bacterial communities of the rainbow trout ( Oncorhynchus mykiss ) midgut and faeces

Dietary live yeast and increased water temperature influence the gut microbiota of rainbow trout

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In vitro characteristics of an Atlantic salmon ( Salmo salar L.) hind gut microbial community in relation to different dietary treatments

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The malleable gut microbiome of juvenile rainbow trout (Oncorhynchus mykiss): Diet-dependent shifts of bacterial community structures

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Seawater transfer alters the intestinal microbiota profiles of Atlantic salmon (Salmo salar L.)

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The gut microbiota: A treasure for human health

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Challenges in microbial ecology: building predictive understanding of community function and dynamics

(2016) Stefanie Widder et al.   ISME Journal

Phylogenetic and functional characterization of the distal intestinal microbiome of rainbow troutOncorhynchus mykissfrom both farm and aquarium settings

(2016) P.P. Lyons et al.   JOURNAL OF APPLIED MICROBIOLOGY

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(2016) Karoline Faust et al.   NATURE

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(2016) Amir Bashan et al.   NATURE

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(2016) Keisha Findley et al.   TRENDS IN MICROBIOLOGY

Gut Microbiota: The Brain Peacekeeper

(2016) Chunlong Mu et al.   Frontiers in Microbiology

Microflora Disturbance during Progression of Glucose Intolerance and Effect of Sitagliptin: An Animal Study

(2016) Xinfeng Yan et al.   Journal of Diabetes Research

Exploiting rRNA operon copy number to investigate bacterial reproductive strategies

(2016) Benjamin R. K. Roller et al.   Nature Microbiology

Topographical Mapping of the Rainbow Trout (Oncorhynchus mykiss) Microbiome Reveals a Diverse Bacterial Community with Antifungal Properties in the Skin

(2015) Liam Lowrey et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Effect of dietary components on the gut microbiota of aquatic animals. A never-ending story?

(2015) E. Ringø et al.   AQUACULTURE NUTRITION

Impact of dietary fiber/starch ratio in shaping caecal microbiota in rabbits

(2015) Yanli Zhu et al.   CANADIAN JOURNAL OF MICROBIOLOGY

The composition of the zebrafish intestinal microbial community varies across development

(2015) W Zac Stephens et al.   ISME Journal

Comparison of the gut microbiomes of 12 bony fish and 3 shark species

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The ecology of the microbiome: Networks, competition, and stability

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Multiple analyses of microbial communities applied to the gut of the wood-feeding termite Reticulitermes flavipes fed on artificial diets

(2015) Cédric Tarayre et al.   SYMBIOSIS

Comparison of the gut microbiomes of 12 bony fish and 3 shark species

(2015) CE Givens et al.   MARINE ECOLOGY PROGRESS SERIES

The development of the gut microbiota in rainbow trout (Oncorhynchus mykiss) is affected by first feeding and diet type

(2014) H.-C. Ingerslev et al.   AQUACULTURE

A network-based approach to identify substrate classes of bacterial glycosyltransferases

(2014) Aminael Sánchez-Rodríguez et al.   BMC GENOMICS

Dynamics in microbial communities: unraveling mechanisms to identify principles

(2014) Allan Konopka et al.   ISME Journal

High or low dietary carbohydrate:protein ratios during first-feeding affect glucose metabolism and intestinal microbiota in juvenile rainbow trout

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Intestinal microbiota in fishes: what's known and what's not

(2014) Kendall D. Clements et al.   MOLECULAR ECOLOGY

Conditionally Rare Taxa Disproportionately Contribute to Temporal Changes in Microbial Diversity

(2014) A. Shade et al.   mBio

Dietary differences are reflected on the gut prokaryotic community structure of wild and commercially reared sea bream (Sparus aurata)

(2014) Konstantinos A. Kormas et al.   MicrobiologyOpen

Intragenomic Heterogeneity of 16S rRNA Genes Causes Overestimation of Prokaryotic Diversity

(2013) Dong-Lei Sun et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Aquacultured Rainbow Trout (Oncorhynchus mykiss) Possess a Large Core Intestinal Microbiota That Is Resistant to Variation in Diet and Rearing Density

(2013) S. Wong et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Factors influencing the grass carp gut microbiome and its effect on metabolism

(2013) Jiajia Ni et al.   FEMS MICROBIOLOGY ECOLOGY

The hindgut lumen prokaryotic microbiota of the termiteReticulitermes flavipesand its responses to dietary lignocellulose composition

(2013) Drion G. Boucias et al.   MOLECULAR ECOLOGY

Diet rapidly and reproducibly alters the human gut microbiome

(2013) Lawrence A. David et al.   NATURE

Gut Microbiota Contributes to the Growth of Fast-Growing Transgenic Common Carp (Cyprinus carpio L.)

(2013) Xuemei Li et al.   PLoS One

Effects of plant-based diets on the distal gut microbiome of rainbow trout (Oncorhynchus mykiss)

(2012) Atul R. Desai et al.   AQUACULTURE

Unraveling assembly of stream biofilm communities

(2012) Katharina Besemer et al.   ISME Journal

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Ciliates as the crucial food source of larval fish in a shallow eutrophic lake

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Environmental and ecological factors that shape the gut bacterial communities of fish: a meta-analysis

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Diversity, stability and resilience of the human gut microbiota

(2012) Catherine A. Lozupone et al.   NATURE

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

PCR-TTGE Analysis of 16S rRNA from Rainbow Trout (Oncorhynchus mykiss) Gut Microbiota Reveals Host-Specific Communities of Active Bacteria

(2012) Paola Navarrete et al.   PLoS One

Incorporating 16S Gene Copy Number Information Improves Estimates of Microbial Diversity and Abundance

(2012) Steven W. Kembel et al.   PLoS Computational Biology

The Rare Bacterial Biosphere

(2011) Carlos Pedrós-Alió   Annual Review of Marine Science

Impact of water quality on bacterioplankton assemblage along Cértima River Basin (central western Portugal) assessed by PCR–DGGE and multivariate analysis

(2011) Daniela R. de Figueiredo et al.   ENVIRONMENTAL MONITORING AND ASSESSMENT

Characterization of rainbow trout (Oncorhynchus mykiss) intestinal microbiota and inflammatory marker gene expression in a recirculating aquaculture system

(2010) Graeme S. Mansfield et al.   AQUACULTURE

Role of heterotrophic protists in first feeding by cod (Gadus morhua) larvae

(2010) JL Overton et al.   MARINE ECOLOGY PROGRESS SERIES

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microbial community diversity associated with the intestinal mucosa of farmed rainbow trout (Oncoryhnchus mykissWalbaum)

(2009) Daniel L Merrifield et al.   AQUACULTURE RESEARCH

Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates

(2009) Victor Kunin et al.   ENVIRONMENTAL MICROBIOLOGY

Microbial community profiling for human microbiome projects: Tools, techniques, and challenges

(2009) M. Hamady et al.   GENOME RESEARCH

Accurate determination of microbial diversity from 454 pyrosequencing data

(2009) Christopher Quince et al.   NATURE METHODS

Evaluation of the bacterial diversity in the feces of cattle using 16S rDNA bacterial tag-encoded FLX amplicon pyrosequencing (bTEFAP)

(2008) Scot E Dowd et al.   BMC MICROBIOLOGY