Gut microbiome populations are associated with structure-specific changes in white matter architecture

Endothelial TLR4 and the microbiome drive cerebral cavernous malformations

(2017) Alan T. Tang et al.   NATURE

ENIGMA and the individual: Predicting factors that affect the brain in 35 countries worldwide

(2017) Paul M. Thompson et al.   NEUROIMAGE

Microbial Reconstitution Reverses Maternal Diet-Induced Social and Synaptic Deficits in Offspring

(2016) Shelly A. Buffington et al.   CELL

White matter microstructure and impulsivity in methamphetamine dependence with and without a history of psychosis

(2016) Anne Uhlmann et al.   HUMAN BRAIN MAPPING

From gut dysbiosis to altered brain function and mental illness: mechanisms and pathways

(2016) G B Rogers et al.   MOLECULAR PSYCHIATRY

Accounting for reciprocal host–microbiome interactions in experimental science

(2016) Thaddeus S. Stappenbeck et al.   NATURE

Gut microbes in correlation with mood: case study in a closed experimental human life support system

(2016) L. Li et al.   NEUROGASTROENTEROLOGY AND MOTILITY

Machine Learning Meta-analysis of Large Metagenomic Datasets: Tools and Biological Insights

(2016) Edoardo Pasolli et al.   PLoS Computational Biology

Microbiota-driven transcriptional changes in prefrontal cortex override genetic differences in social behavior

(2016) Mar Gacias et al.   eLife

Regulation of prefrontal cortex myelination by the microbiota

(2016) A E Hoban et al.   Translational Psychiatry

Long term consequences on spatial learning-memory of low-calorie diet during adolescence in female rats; hippocampal and prefrontal cortex BDNF level, expression of NeuN and cell proliferation in dentate gyrus

(2015) Zülal Kaptan et al.   BRAIN RESEARCH

Gut Microbiota Interacts With Brain Microstructure and Function

(2015) José-Manuel Fernandez-Real et al.   JOURNAL OF CLINICAL ENDOCRINOLOGY & METABOLISM

Expression of the short chain fatty acid receptor GPR41/FFAR3 in autonomic and somatic sensory ganglia

(2015) M.K. Nøhr et al.   NEUROSCIENCE

circlize implements and enhances circular visualization in R

(2014) Zuguang Gu et al.   BIOINFORMATICS

The Treatment-Naive Microbiome in New-Onset Crohn’s Disease

(2014) Dirk Gevers et al.   Cell Host & Microbe

Methodological considerations on tract-based spatial statistics (TBSS)

(2014) Michael Bach et al.   NEUROIMAGE

Microbiota Modulate Behavioral and Physiological Abnormalities Associated with Neurodevelopmental Disorders

(2013) Elaine Y. Hsiao et al.   CELL

Phagocytic glial cells: sculpting synaptic circuits in the developing nervous system

(2013) Dorothy P. Schafer et al.   CURRENT OPINION IN NEUROBIOLOGY

Consumption of Fermented Milk Product With Probiotic Modulates Brain Activity

(2013) Kirsten Tillisch et al.   GASTROENTEROLOGY

Diet rapidly and reproducibly alters the human gut microbiome

(2013) Lawrence A. David et al.   NATURE

3-Dimensional Diffusion Tensor Imaging (DTI) Atlas of the Rat Brain

(2013) Ashley Rumple et al.   PLoS One

γ-Aminobutyric acid production by culturable bacteria from the human intestine

(2012) E. Barrett et al.   JOURNAL OF APPLIED MICROBIOLOGY

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

DTI registration in atlas based fiber analysis of infantile Krabbe disease

(2011) Yi Wang et al.   NEUROIMAGE

Normal gut microbiota modulates brain development and behavior

(2011) R. D. Heijtz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Utility of axial and radial diffusivity from diffusion tensor MRI as markers of neurodegeneration in amyotrophic lateral sclerosis

(2010) Nader S. Metwalli et al.   BRAIN RESEARCH

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

A reproducible evaluation of ANTs similarity metric performance in brain image registration

(2010) Brian B. Avants et al.   NEUROIMAGE

A prospective diffusion tensor imaging study in mild traumatic brain injury

(2010) A. R. Mayer et al.   NEUROLOGY

TheB-matrix must be rotated when correcting for subject motion in DTI data

(2009) Alexander Leemans et al.   MAGNETIC RESONANCE IN MEDICINE

About “axial” and “radial” diffusivities

(2009) Claudia A.M. Wheeler-Kingshott et al.   MAGNETIC RESONANCE IN MEDICINE

Threshold-free cluster enhancement: Addressing problems of smoothing, threshold dependence and localisation in cluster inference

(2008) S SMITH et al.   NEUROIMAGE