Genome-Wide Association Study of Seed Dormancy and the Genomic Consequences of Improvement Footprints in Rice (Oryza sativa L.)

New Genetic Loci Associated with Preharvest Sprouting and Its Evaluation Based on the Model Equation in Rice

(2017) Gi-An Lee et al.   Frontiers in Plant Science

Genome-wide association mapping revealed a diverse genetic basis of seed dormancy across subpopulations in rice (Oryza sativa L.)

(2016) Risper Auma Magwa et al.   BMC GENETICS

Genetic variation and association mapping for 12 agronomic traits in indica rice

(2015) Qing Lu et al.   BMC GENOMICS

Genome-wide association study for flowering time, maturity dates and plant height in early maturing soybean (Glycine max) germplasm

(2015) Jiaoping Zhang et al.   BMC GENOMICS

Genetic analysis of inflorescence and plant height components in sorghum (Panicoidae) and comparative genetics with rice (Oryzoidae)

(2015) Dong Zhang et al.   BMC PLANT BIOLOGY

Genome-wide association mapping of salinity tolerance in rice (Oryza sativa)

(2015) V. Kumar et al.   DNA RESEARCH

Genome-wide association-mapping for fruit quality traits in tomato

(2015) Jing Zhang et al.   EUPHYTICA

Association Mapping of Quantitative Trait Loci for Mineral Element Contents in Whole Grain Rice (Oryza sativa L.)

(2015) Yan Huang et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Fluctuation of Arabidopsis seed dormancy with relative humidity and temperature during dry storage

(2015) Isabelle Basbouss-Serhal et al.   JOURNAL OF EXPERIMENTAL BOTANY

Genome-Wide Association of Rice Blast Disease Resistance and Yield-Related Components of Rice

(2015) Xueyan Wang et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Genome-wide association studies in elite varieties of German winter barley using single-marker and haplotype-based methods

(2015) Inka Gawenda et al.   PLANT BREEDING

New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis

(2015) Yan Lv et al.   PLANT CELL AND ENVIRONMENT

Map-Based Cloning of qSD1-2 Identified a Gibberellin Synthesis Gene Regulating the Development of Endosperm-Imposed Dormancy in Rice

(2015) Heng Ye et al.   PLANT PHYSIOLOGY

Uncovering novel loci for mesocotyl elongation and shoot length in indica rice through genome-wide association mapping

(2015) Qing Lu et al.   PLANTA

Genome-wide association study of phosphorus-deficiency-tolerance traits in Aegilops tauschii

(2015) Yaxi Liu et al.   THEORETICAL AND APPLIED GENETICS

Genome-wide association study, genomic prediction and marker-assisted selection for seed weight in soybean (Glycine max)

(2015) Jiaoping Zhang et al.   THEORETICAL AND APPLIED GENETICS

Genomic analysis of hybrid rice varieties reveals numerous superior alleles that contribute to heterosis

(2015) Xuehui Huang et al.   Nature Communications

Genetic discovery for oil production and quality in sesame

(2015) Xin Wei et al.   Nature Communications

Identification of Candidate Genes for Seed Glucosinolate Content Using Association Mapping in Brassica napus L.

(2015) Cun-Min Qu et al.   Genes

Genome-Wide Association Mapping for Yield and Other Agronomic Traits in an Elite Breeding Population of Tropical Rice (Oryza sativa)

(2015) Hasina Begum et al.   PLoS One

Genome-wide association mapping of quantitative resistance to sudden death syndrome in soybean

(2014) Zixiang Wen et al.   BMC GENOMICS

Genome-wide association study of blast resistance in indica rice

(2014) Caihong Wang et al.   BMC PLANT BIOLOGY

TheIBOgermination quantitative trait locus encodes a phosphatase 2C-related variant with a nonsynonymous amino acid change that interferes with abscisic acid signaling

(2014) Amélia Amiguet-Vercher et al.   NEW PHYTOLOGIST

Genetic Diversity and Population Structure in a Legacy Collection of Spring Barley Landraces Adapted to a Wide Range of Climates

(2014) Raj K. Pasam et al.   PLoS One

Genome-wide association study for grain yield and related traits in an elite spring wheat population grown in temperate irrigated environments

(2014) Sivakumar Sukumaran et al.   THEORETICAL AND APPLIED GENETICS

Combining high-throughput phenotyping and genome-wide association studies to reveal natural genetic variation in rice

(2014) Wanneng Yang et al.   Nature Communications

Genotyping of Endosperms to Determine Seed Dormancy Genes Regulating Germination Through Embryonic, Endospermic, or Maternal Tissues in Rice

(2014) Xing-You Gu et al.   G3-Genes Genomes Genetics

Classic Selective Sweeps Revealed by Massive Sequencing in Cattle

(2014) Saber Qanbari et al.   PLoS Genetics

Transcriptome analysis of embryo maturation in maize

(2013) Keat Thomas Teoh et al.   BMC PLANT BIOLOGY

Cloning and Characterization of a Critical Regulator for Preharvest Sprouting in Wheat

(2013) S. Liu et al.   GENETICS

Genetic diversity and classification of Oryza sativa with emphasis on Chinese rice germplasm

(2013) C-H Wang et al.   HEREDITY

Expression of 9-cis-EPOXYCAROTENOID DIOXYGENASE4 Is Essential for Thermoinhibition of Lettuce Seed Germination but Not for Seed Development or Stress Tolerance

(2013) H. Huo et al.   PLANT CELL

An-1 Encodes a Basic Helix-Loop-Helix Protein That Regulates Awn Development, Grain Size, and Grain Number in Rice

(2013) J. Luo et al.   PLANT CELL

Mapping of QTL for seed dormancy in a winter oilseed rape doubled haploid population

(2013) Jörg Schatzki et al.   THEORETICAL AND APPLIED GENETICS

Signatures of Diversifying Selection in European Pig Breeds

(2013) Samantha Wilkinson et al.   PLoS Genetics

A genome-wide association study on androstenone levels in pigs reveals a cluster of candidate genes on chromosome 6

(2012) Naomi Duijvesteijn et al.   BMC GENETICS

A map of rice genome variation reveals the origin of cultivated rice

(2012) Xuehui Huang et al.   NATURE

Comparative transcriptomics of three Poaceae species reveals patterns of gene expression evolution

(2012) Rebecca M. Davidson et al.   PLANT JOURNAL

Association Between Seed Dormancy and Pericarp Color Is Controlled by a Pleiotropic Gene That Regulates Abscisic Acid and Flavonoid Synthesis in Weedy Red Rice

(2011) Xing-You Gu et al.   GENETICS

Genome-wide association study of flowering time and grain yield traits in a worldwide collection of rice germplasm

(2011) Xuehui Huang et al.   NATURE GENETICS

Genetic Control of a Transition from Black to Straw-White Seed Hull in Rice Domestication

(2011) B.-F. Zhu et al.   PLANT PHYSIOLOGY

Artificial selection for a green revolution gene during japonica rice domestication

(2011) K. Asano et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mapping and characterization of seed dormancy QTLs using chromosome segment substitution lines in rice

(2011) Salem Marzougui et al.   THEORETICAL AND APPLIED GENETICS

Population differentiation as a test for selective sweeps

(2010) H. Chen et al.   GENOME RESEARCH

A Genome-Wide Search for Signals of High-Altitude Adaptation in Tibetans

(2010) S. Xu et al.   MOLECULAR BIOLOGY AND EVOLUTION

Characterization of a global germplasm collection and its potential utilization for analysis of complex quantitative traits in maize

(2010) Xiaohong Yang et al.   MOLECULAR BREEDING

Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines

(2010) Susanna Atwell et al.   NATURE

Regulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice

(2010) Yongqing Jiao et al.   NATURE GENETICS

Mixed linear model approach adapted for genome-wide association studies

(2010) Zhiwu Zhang et al.   NATURE GENETICS

Genome-wide association studies of 14 agronomic traits in rice landraces

(2010) Xuehui Huang et al.   NATURE GENETICS

Resequencing of 31 wild and cultivated soybean genomes identifies patterns of genetic diversity and selection

(2010) Hon-Ming Lam et al.   NATURE GENETICS

Identification of QTLs for seed dormancy in rice (Oryza sativa L.)

(2010) Kun Xie et al.   PLANT BREEDING

Molecular cloning of Sdr4, a regulator involved in seed dormancy and domestication of rice

(2010) K. Sugimoto et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Establishing an adjusted p-value threshold to control the family-wide type 1 error in genome wide association studies

(2009) Priya Duggal et al.   BMC GENOMICS

Software engineering the mixed model for genome-wide association studies on large samples

(2009) Z. Zhang et al.   BRIEFINGS IN BIOINFORMATICS

DNA changes tell us about rice domestication

(2009) Takeshi Izawa et al.   CURRENT OPINION IN PLANT BIOLOGY

Three classes of loci controlling preharvest sprouting in rye (Secale cereale L.) discerned by means of bidirectional selective genotyping (BSG)

(2009) P. Masojć et al.   EUPHYTICA

A major QTL associated with preharvest sprouting in rapeseed (Brassica napus L.)

(2009) Faqiang Feng et al.   EUPHYTICA

High-throughput SNP genotyping with the GoldenGate assay in maize

(2009) Jianbing Yan et al.   MOLECULAR BREEDING

The qSD12 underlying gene promotes abscisic acid accumulation in early developing seeds to induce primary dormancy in rice

(2009) Xing-You Gu et al.   PLANT MOLECULAR BIOLOGY

Efficient Control of Population Structure in Model Organism Association Mapping

(2008) H. M. Kang et al.   GENETICS

Control of a key transition from prostrate to erect growth in rice domestication

(2008) Lubin Tan et al.   NATURE GENETICS

Genetic control of rice plant architecture under domestication

(2008) Jian Jin et al.   NATURE GENETICS

Mutations of genes in synthesis of the carotenoid precursors of ABA lead to pre-harvest sprouting and photo-oxidation in rice

(2008) Jun Fang et al.   PLANT JOURNAL

Hormones in the grains and roots in relation to post-anthesis development of inferior and superior spikelets in japonica/indica hybrid rice

(2008) Hao Zhang et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY