New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis

COLD1 Confers Chilling Tolerance in Rice

(2015) Yun Ma et al.   CELL

Genetic Analysis of Cold Tolerance at the Germination and Booting Stages in Rice by Association Mapping

(2015) Yinghua Pan et al.   PLoS One

QTL mapping and development of candidate gene-derived DNA markers associated with seedling cold tolerance in rice (Oryza sativa L.)

(2014) Suk-Man Kim et al.   MOLECULAR GENETICS AND GENOMICS

Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism

(2014) Wei Chen et al.   NATURE GENETICS

Advantages and pitfalls in the application of mixed-model association methods

(2014) Jian Yang et al.   NATURE GENETICS

RiceVarMap: a comprehensive database of rice genomic variations

(2014) Hu Zhao et al.   NUCLEIC ACIDS RESEARCH

RiceLTG1is involved in adaptive growth and fitness under low ambient temperature

(2014) Guangwen Lu et al.   PLANT JOURNAL

Genome Wide Association Mapping of Grain Arsenic, Copper, Molybdenum and Zinc in Rice (Oryza sativa L.) Grown at Four International Field Sites

(2014) Gareth J. Norton et al.   PLoS One

MicroRNA319 Positively Regulates Cold Tolerance by Targeting OsPCF6 and OsTCP21 in Rice (Oryza sativa L.)

(2014) Sun-ting Wang et al.   PLoS One

Combining high-throughput phenotyping and genome-wide association studies to reveal natural genetic variation in rice

(2014) Wanneng Yang et al.   Nature Communications

Genetical and morphological characterization of cold tolerance at fertilization stage in rice

(2013) Hiroshi Shinada et al.   BREEDING SCIENCE

Natural variation in Ghd7.1 plays an important role in grain yield and adaptation in rice

(2013) Wenhao Yan et al.   CELL RESEARCH

Sequencing-based genome-wide association study in rice

(2013) Bin Han et al.   CURRENT OPINION IN PLANT BIOLOGY

Genome-wide Association Analysis of Ten Chilling Tolerance Indices at the Germination and Seedling Stages in Maize

(2013) Juan Huang et al.   Journal of Integrative Plant Biology

Natural variation and artificial selection in four genes determine grain shape in rice

(2013) Li Lu et al.   NEW PHYTOLOGIST

Association mapping for chilling tolerance in elite flint and dent maize inbred lines evaluated in growth chamber and field experiments

(2013) ALEXANDER STRIGENS et al.   PLANT CELL AND ENVIRONMENT

Overexpression of microRNA319 impacts leaf morphogenesis and leads to enhanced cold tolerance in rice (Oryza sativa L.)

(2013) CHUNHUA YANG et al.   PLANT CELL AND ENVIRONMENT

Down-Regulation of OsSPX1 Causes High Sensitivity to Cold and Oxidative Stresses in Rice Seedlings

(2013) Chunchao Wang et al.   PLoS One

Global Expression Profiling of Low Temperature Induced Genes in the Chilling Tolerant Japonica Rice Jumli Marshi

(2013) Aakash Chawade et al.   PLoS One

Genome-Wide Association Mapping of Root Traits in a Japonica Rice Panel

(2013) Brigitte Courtois et al.   PLoS One

Association of functional nucleotide polymorphisms at DTH2 with the northward expansion of rice cultivation in Asia

(2013) W. Wu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

qLTG-9, a stable quantitative trait locus for low-temperature germination in rice (Oryza sativa L.)

(2013) Linfang Li et al.   THEORETICAL AND APPLIED GENETICS

Genetic variation and association mapping of silica concentration in rice hulls using a germplasm collection

(2012) R. Bryant et al.   GENETICA

Increased leaf photosynthesis caused by elevated stomatal conductance in a rice mutant deficient in SLAC1, a guard cell anion channel protein

(2012) Kensuke Kusumi et al.   JOURNAL OF EXPERIMENTAL BOTANY

A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice

(2012) An Yang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Microarray-Assisted Fine-Mapping of Quantitative Trait Loci for Cold Tolerance in Rice

(2012) Fengxia Liu et al.   Molecular Plant

Low-temperature perception leading to gene expression and cold tolerance in higher plants

(2012) Marc R. Knight et al.   NEW PHYTOLOGIST

Unraveling the Complex Trait of Harvest Index with Association Mapping in Rice (Oryza sativa L.)

(2012) Xiaobai Li et al.   PLoS One

Allelic Analysis of Sheath Blight Resistance with Association Mapping in Rice

(2012) Limeng Jia et al.   PLoS One

Colinearity and Similar Expression Pattern of Rice DREB1s Reveal Their Functional Conservation in the Cold-Responsive Pathway

(2012) Donghai Mao et al.   PLoS One

Profiling and Association Mapping of Grain Metabolites in a Subset of the Core Collection of Chinese Rice Germplasm (Oryza sativaL.)

(2011) Qiaojun Lou et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Identification of a cluster of PR4-like genes involved in stress responses in rice

(2011) Nili Wang et al.   JOURNAL OF PLANT PHYSIOLOGY

Genome-wide association study of flowering time and grain yield traits in a worldwide collection of rice germplasm

(2011) Xuehui Huang et al.   NATURE GENETICS

Cyclic electron flow around photosystem I via chloroplast NAD(P)H dehydrogenase (NDH) complex performs a significant physiological role during photosynthesis and plant growth at low temperature in rice

(2011) Wataru Yamori et al.   PLANT JOURNAL

Delimitation of a QTL region controlling cold tolerance at booting stage of a cultivar, ‘Lijiangxintuanheigu’, in rice, Oryza sativa L.

(2011) S. Shirasawa et al.   THEORETICAL AND APPLIED GENETICS

Genome-wide association mapping reveals a rich genetic architecture of complex traits in Oryza sativa

(2011) Keyan Zhao et al.   Nature Communications

Genetic Architecture of Aluminum Tolerance in Rice (Oryza sativa) Determined through Genome-Wide Association Analysis and QTL Mapping

(2011) Adam N. Famoso et al.   PLoS Genetics

Using association mapping to dissect the genetic basis of complex traits in plants

(2010) D. Hall et al.   Briefings in Functional Genomics

Association mapping for yield and grain quality traits in rice (Oryza sativa L.)

(2010) Tereza Cristina de Oliveira Borba et al.   GENETICS AND MOLECULAR BIOLOGY

Genetic effects of major QTLs controlling low-temperature germinability in different genetic backgrounds in rice (Oryza sativa L.)

(2010) Natsuko Iwata et al.   GENOME

Toward the Domestication of Lignocellulosic Energy Crops: Learning from Food Crop DomesticationFree Access

(2010) Tao Sang   Journal of Integrative Plant Biology

Identification and fine mapping of a major quantitative trait locus originating from wild rice, controlling cold tolerance at the seedling stage

(2010) Maiko Koseki et al.   MOLECULAR GENETICS AND GENOMICS

Genome-wide association studies of 14 agronomic traits in rice landraces

(2010) Xuehui Huang et al.   NATURE GENETICS

OsRAN2, essential for mitosis, enhances cold tolerance in rice by promoting export of intranuclear tubulin and maintaining cell division under cold stress

(2010) NA CHEN et al.   PLANT CELL AND ENVIRONMENT

Origins of functional nucleotide polymorphisms in a major quantitative trait locus, qLTG3-1, controlling low-temperature germinability in rice

(2010) Kenji Fujino et al.   PLANT MOLECULAR BIOLOGY

Association mapping of grain color, phenolic content, flavonoid content and antioxidant capacity in dehulled rice

(2010) Yafang Shao et al.   THEORETICAL AND APPLIED GENETICS

Fine mapping a QTL qCTB7 for cold tolerance at the booting stage on rice chromosome 7 using a near-isogenic line

(2010) Lei Zhou et al.   THEORETICAL AND APPLIED GENETICS

Association mapping of stigma and spikelet characteristics in rice (Oryza sativa L.)

(2009) Wen Gui Yan et al.   MOLECULAR BREEDING

Allelic diversities in rice starch biosynthesis lead to a diverse array of rice eating and cooking qualities

(2009) Z. Tian et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

SRWD: A novel WD40 protein subfamily regulated by salt stress in rice (OryzasativaL.)

(2008) Ji Huang et al.   GENE

Functional characterization of two cold shock domain proteins from Oryza sativa

(2008) VIJAY CHAIKAM et al.   PLANT CELL AND ENVIRONMENT

Overexpression of OsiSAP8, a member of stress associated protein (SAP) gene family of rice confers tolerance to salt, drought and cold stress in transgenic tobacco and rice

(2008) Vydehi Kanneganti et al.   PLANT MOLECULAR BIOLOGY

Molecular identification of a major quantitative trait locus, qLTG3-1, controlling low-temperature germinability in rice

(2008) K. Fujino et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA