Candidatus Nitrosocaldus cavascurensis, an Ammonia Oxidizing, Extremely Thermophilic Archaeon with a Highly Mobile Genome
出版年份 2018 全文链接
标题
Candidatus Nitrosocaldus cavascurensis, an Ammonia Oxidizing, Extremely Thermophilic Archaeon with a Highly Mobile Genome
作者
关键词
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出版物
Frontiers in Microbiology
Volume 9, Issue -, Pages -
出版商
Frontiers Media SA
发表日期
2018-01-26
DOI
10.3389/fmicb.2018.00028
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注意：仅列出部分参考文献，下载原文获取全部文献信息。- Novel Families of Archaeo-Eukaryotic Primases Associated with Mobile Genetic Elements of Bacteria and Archaea
- (2018) Darius Kazlauskas et al. JOURNAL OF MOLECULAR BIOLOGY
- Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation
- (2017) Sergey Koren et al. GENOME RESEARCH
- The growing tree of Archaea: new perspectives on their diversity, evolution and ecology
- (2017) Panagiotis S Adam et al. ISME Journal
- The enigmatic archaeal virosphere
- (2017) David Prangishvili et al. NATURE REVIEWS MICROBIOLOGY
- Integrative modeling of gene and genome evolution roots the archaeal tree of life
- (2017) Tom A. Williams et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Nitric oxide is an obligate bacterial nitrification intermediate produced by hydroxylamine oxidoreductase
- (2017) Jonathan D. Caranto et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Identification and characterization of a heterotrimeric archaeal DNA polymerase holoenzyme
- (2017) Jiangyu Yan et al. Nature Communications
- Nitrogen and Oxygen Isotope Effects of Ammonia Oxidation by Thermophilic Thaumarchaeota from a Geothermal Water Stream
- (2016) Manabu Nishizawa et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Pathways and key intermediates required for obligate aerobic ammonia-dependent chemolithotrophy in bacteria and Thaumarchaeota
- (2016) Jessica A Kozlowski et al. ISME Journal
- MicroScope in 2017: an expanding and evolving integrated resource for community expertise of microbial genomes
- (2016) David Vallenet et al. NUCLEIC ACIDS RESEARCH
- Proteomics and comparative genomics ofNitrososphaera viennensisreveal the core genome and adaptations of archaeal ammonia oxidizers
- (2016) Melina Kerou et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Hydrogen peroxide detoxification is a key mechanism for growth of ammonia-oxidizing archaea
- (2016) Jong-Geol Kim et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Comparison of Nitrogen Oxide Metabolism among Diverse Ammonia-Oxidizing Bacteria
- (2016) Jessica A. Kozlowski et al. Frontiers in Microbiology
- Diversity and Evolution of Type IV pili Systems in Archaea
- (2016) Kira S. Makarova et al. Frontiers in Microbiology
- HydDB: A web tool for hydrogenase classification and analysis
- (2016) Dan Søndergaard et al. Scientific Reports
- Integrative and Conjugative Elements (ICEs): What They Do and How They Work
- (2015) Christopher M. Johnson et al. Annual Review of Genetics
- [FeFe]- and [NiFe]-hydrogenase diversity, mechanism, and maturation
- (2015) John W. Peters et al. BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH
- DNA repair in hyperthermophilic and hyperradioresistant microorganisms
- (2015) Yoshizumi Ishino et al. CURRENT OPINION IN MICROBIOLOGY
- The production of nitric oxide by marine ammonia-oxidizing archaea and inhibition of archaeal ammonia oxidation by a nitric oxide scavenger
- (2015) Willm Martens-Habbena et al. ENVIRONMENTAL MICROBIOLOGY
- Metabolic potential of fatty acid oxidation and anaerobic respiration by abundant members of Thaumarchaeota and Thermoplasmata in deep anoxic peat
- (2015) Xueju Lin et al. ISME Journal
- Physiological and genomic characterization of two novel marine thaumarchaeal strains indicates niche differentiation
- (2015) Barbara Bayer et al. ISME Journal
- Ecophysiology of an uncultivated lineage of Aigarchaeota from an oxic, hot spring filamentous ‘streamer’ community
- (2015) Jacob P Beam et al. ISME Journal
- Genomic and metagenomic surveys of hydrogenase distribution indicate H2 is a widely utilised energy source for microbial growth and survival
- (2015) Chris Greening et al. ISME Journal
- The two-domain tree of life is linked to a new root for the Archaea
- (2015) Kasie Raymann et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The impact of temperature on microbial diversity and AOA activity in the Tengchong Geothermal Field, China
- (2015) Haizhou Li et al. Scientific Reports
- Understanding DNA Repair in Hyperthermophilic Archaea: Persistent Gaps and Other Reasons to Focus on the Fork
- (2015) Dennis W. Grogan ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL
- Malonic Semialdehyde Reductase from the Archaeon Nitrosopumilus maritimus Is Involved in the Autotrophic 3-Hydroxypropionate/4-Hydroxybutyrate Cycle
- (2014) Julia Otte et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Base excision repair in Archaea: Back to the future in DNA repair
- (2014) Stefano Grasso et al. DNA REPAIR
- Rooting the Domain Archaea by Phylogenomic Analysis Supports the Foundation of the New Kingdom Proteoarchaeota
- (2014) Céline Petitjean et al. Genome Biology and Evolution
- Nitrososphaera viennensis gen. nov., sp. nov., an aerobic and mesophilic, ammonia-oxidizing archaeon from soil and a member of the archaeal phylum Thaumarchaeota
- (2014) M. Stieglmeier et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
- (2014) Lam-Tung Nguyen et al. MOLECULAR BIOLOGY AND EVOLUTION
- MacSyFinder: A Program to Mine Genomes for Molecular Systems with an Application to CRISPR-Cas Systems
- (2014) Sophie S. Abby et al. PLoS One
- Ammonia-oxidizing archaea use the most energy-efficient aerobic pathway for CO2 fixation
- (2014) M. Konneke et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Marine ammonia-oxidizing archaeal isolates display obligate mixotrophy and wide ecotypic variation
- (2014) W. Qin et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Pervasive domestication of defective prophages by bacteria
- (2014) L.-M. Bobay et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Variability of the transporter gene complement in ammonia-oxidizing archaea
- (2014) Pierre Offre et al. TRENDS IN MICROBIOLOGY
- Evolution of replicative DNA polymerases in archaea and their contributions to the eukaryotic replication machinery
- (2014) Kira S. Makarova et al. Frontiers in Microbiology
- Ori-Finder 2, an integrated tool to predict replication origins in the archaeal genomes
- (2014) Hao Luo et al. Frontiers in Microbiology
- Archaea in Biogeochemical Cycles
- (2013) Pierre Offre et al. Annual Review of Microbiology
- How hyperthermophiles adapt to change their lives: DNA exchange in extreme conditions
- (2013) Marleen van Wolferen et al. EXTREMOPHILES
- Responses of the terrestrial ammonia-oxidizing archaeonCa. Nitrososphaera viennensis and the ammonia-oxidizing bacteriumNitrosospira multiformisto nitrification inhibitors
- (2013) Tianlin Shen et al. FEMS MICROBIOLOGY LETTERS
- Niche specialization of novel Thaumarchaeota to oxic and hypoxic acidic geothermal springs of Yellowstone National Park
- (2013) Jacob P Beam et al. ISME Journal
- Nitrification rates in Arctic soils are associated with functionally distinct populations of ammonia-oxidizing archaea
- (2013) Ricardo J Eloy Alves et al. ISME Journal
- Archaeal DNA Polymerase D but Not DNA Polymerase B Is Required for Genome Replication in Thermococcus kodakarensis
- (2013) L. Cubonova et al. JOURNAL OF BACTERIOLOGY
- Assembling Single-Cell Genomes and Mini-Metagenomes From Chimeric MDA Products
- (2013) Sergey Nurk et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes
- (2013) Mads Albertsen et al. NATURE BIOTECHNOLOGY
- The Transporter Classification Database
- (2013) Milton H. Saier et al. NUCLEIC ACIDS RESEARCH
- Pfam: the protein families database
- (2013) Robert D. Finn et al. NUCLEIC ACIDS RESEARCH
- Hydroxylamine as an intermediate in ammonia oxidation by globally abundant marine archaea
- (2013) N. Vajrala et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Metagenomics of Kamchatkan hot spring filaments reveal two new major (hyper)thermophilic lineages related to Thaumarchaeota
- (2013) Laura Eme et al. RESEARCH IN MICROBIOLOGY
- TheNitrosopumilus maritimusCdvB, but Not FtsZ, Assembles into Polymers
- (2013) Kian-Hong Ng et al. ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL
- Physiology and Diversity of Ammonia-Oxidizing Archaea
- (2012) David A. Stahl et al. Annual Review of Microbiology
- Diversity, Physiology, and Niche Differentiation of Ammonia-Oxidizing Archaea
- (2012) Roland Hatzenpichler APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Diversity and evolution of bioenergetic systems involved in microbial nitrogen compound transformations
- (2012) Jörg Simon et al. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS
- High-quality sequence clustering guided by network topology and multiple alignment likelihood
- (2012) Vincent Miele et al. BIOINFORMATICS
- Unipro UGENE: a unified bioinformatics toolkit
- (2012) Konstantin Okonechnikov et al. BIOINFORMATICS
- Structure and function of the adhesive type IV pilus ofSulfolobus acidocaldarius
- (2012) Anna-Lena Henche et al. ENVIRONMENTAL MICROBIOLOGY
- Mimicking the oxygen minimum zones: stimulating interaction of aerobic archaeal and anaerobic bacterial ammonia oxidizers in a laboratory-scale model system
- (2012) Jia Yan et al. ENVIRONMENTAL MICROBIOLOGY
- The genome of the ammonia-oxidizingCandidatusNitrososphaera gargensis: insights into metabolic versatility and environmental adaptations
- (2012) Anja Spang et al. ENVIRONMENTAL MICROBIOLOGY
- Sediment microbial communities in Great Boiling Spring are controlled by temperature and distinct from water communities
- (2012) Jessica K Cole et al. ISME Journal
- Draft Genome Sequence of an Ammonia-Oxidizing Archaeon, "Candidatus Nitrosopumilus sediminis" AR2, from Svalbard in the Arctic Circle
- (2012) S.-J. Park et al. JOURNAL OF BACTERIOLOGY
- A thaumarchaeal provirus testifies for an ancient association of tailed viruses with archaea
- (2011) Mart Krupovic et al. BIOCHEMICAL SOCIETY TRANSACTIONS
- Ultra-fast sequence clustering from similarity networks with SiLiX
- (2011) Vincent Miele et al. BMC BIOINFORMATICS
- The Thaumarchaeota: an emerging view of their phylogeny and ecophysiology
- (2011) Michael Pester et al. CURRENT OPINION IN MICROBIOLOGY
- Ammonia oxidation, denitrification and dissimilatory nitrate reduction to ammonium in two US Great Basin hot springs with abundant ammonia-oxidizing archaea
- (2011) Jeremy A. Dodsworth et al. ENVIRONMENTAL MICROBIOLOGY
- Spotlight on the Thaumarchaeota
- (2011) C Brochier-Armanet et al. ISME Journal
- Distinct Physiological Roles of the Three [NiFe]-Hydrogenase Orthologs in the Hyperthermophilic Archaeon Thermococcus kodakarensis
- (2011) T. Kanai et al. JOURNAL OF BACTERIOLOGY
- Adaptation to Environmental Temperature Is a Major Determinant of Molecular Evolutionary Rates in Archaea
- (2011) M. Groussin et al. MOLECULAR BIOLOGY AND EVOLUTION
- Molecular and Structural Basis of ESCRT-III Recruitment to Membranes during Archaeal Cell Division
- (2011) Rachel Y. Samson et al. MOLECULAR CELL
- Cdv-based cell division and cell cycle organization in the thaumarchaeon Nitrosopumilus maritimus
- (2011) Erik A. Pelve et al. MOLECULAR MICROBIOLOGY
- Thaumarchaeotes abundant in refinery nitrifying sludges express amoA but are not obligate autotrophic ammonia oxidizers
- (2011) M. Mussmann et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Nitrososphaera viennensis, an ammonia oxidizing archaeon from soil
- (2011) M. Tourna et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Synthesis, Production, and Biotechnological Applications of Exopolysaccharides and Polyhydroxyalkanoates by Archaea
- (2011) Annarita Poli et al. ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL
- Accelerated Profile HMM Searches
- (2011) Sean R. Eddy PLoS Computational Biology
- RNA-Based Investigation of Ammonia-Oxidizing Archaea in Hot Springs of Yunnan Province, China
- (2010) H. Jiang et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- ScripTree: scripting phylogenetic graphics
- (2010) François Chevenet et al. BIOINFORMATICS
- BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments
- (2010) Alexis Criscuolo et al. BMC EVOLUTIONARY BIOLOGY
- Homologues of nitrite reductases in ammonia-oxidizing archaea: diversity and genomic context
- (2010) Rita Bartossek et al. ENVIRONMENTAL MICROBIOLOGY
- Integrated metatranscriptomic and metagenomic analyses of stratified microbial assemblages in the open ocean
- (2010) Yanmei Shi et al. ISME Journal
- Haloferax volcanii Flagella Are Required for Motility but Are Not Involved in PibD-Dependent Surface Adhesion
- (2010) M. Tripepi et al. JOURNAL OF BACTERIOLOGY
- Identification of Missing Genes and Enzymes for Autotrophic Carbon Fixation in Crenarchaeota
- (2010) W. H. Ramos-Vera et al. JOURNAL OF BACTERIOLOGY
- Comparative Analysis of the Mosaic Genomes of Tailed Archaeal Viruses and Proviruses Suggests Common Themes for Virion Architecture and Assembly with Tailed Viruses of Bacteria
- (2010) Mart Krupovič et al. JOURNAL OF MOLECULAR BIOLOGY
- UV-inducible cellular aggregation of the hyperthermophilic archaeon Sulfolobus solfataricus is mediated by pili formation
- (2010) Sabrina Fröls et al. MOLECULAR MICROBIOLOGY
- Evolution of diverse cell division and vesicle formation systems in Archaea
- (2010) Kira S. Makarova et al. NATURE REVIEWS MICROBIOLOGY
- Insights into the evolution of Archaea and eukaryotic protein modifier systems revealed by the genome of a novel archaeal group
- (2010) Takuro Nunoura et al. NUCLEIC ACIDS RESEARCH
- The evolution and mechanisms of nucleotide excision repair proteins
- (2010) Christophe Rouillon et al. RESEARCH IN MICROBIOLOGY
- Distinct gene set in two different lineages of ammonia-oxidizing archaea supports the phylum Thaumarchaeota
- (2010) Anja Spang et al. TRENDS IN MICROBIOLOGY
- Malonic Semialdehyde Reductase, Succinic Semialdehyde Reductase, and Succinyl-Coenzyme A Reductase from Metallosphaera sedula: Enzymes of the Autotrophic 3-Hydroxypropionate/4-Hydroxybutyrate Cycle in Sulfolobales
- (2009) D. Kockelkorn et al. JOURNAL OF BACTERIOLOGY
- MicroScope: a platform for microbial genome annotation and comparative genomics
- (2009) D. Vallenet et al. Database-The Journal of Biological Databases and Curation
- Global Occurrence of Archaeal amoA Genes in Terrestrial Hot Springs
- (2008) C. L. Zhang et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- The influence of soil pH on the diversity, abundance and transcriptional activity of ammonia oxidizing archaea and bacteria
- (2008) Graeme W. Nicol et al. ENVIRONMENTAL MICROBIOLOGY
- Cultivation of a thermophilic ammonia oxidizing archaeon synthesizing crenarchaeol
- (2008) José R. de la Torre et al. ENVIRONMENTAL MICROBIOLOGY
- Relative contributions of archaea and bacteria to aerobic ammonia oxidation in the environment
- (2008) James I. Prosser et al. ENVIRONMENTAL MICROBIOLOGY
- Nitrification in terrestrial hot springs of Iceland and Kamchatka
- (2008) Laila J. Reigstad et al. FEMS MICROBIOLOGY ECOLOGY
- Crenarchaeal Arginine Decarboxylase Evolved from anS-Adenosylmethionine Decarboxylase Enzyme
- (2008) Teresa N. Giles et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Mesophilic crenarchaeota: proposal for a third archaeal phylum, the Thaumarchaeota
- (2008) Céline Brochier-Armanet et al. NATURE REVIEWS MICROBIOLOGY
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