The Effect of DNA Extraction Methods on Observed Microbial Communities from Fibrous and Liquid Rumen Fractions of Dairy Cows

Diurnal Dynamics of Gaseous and Dissolved Metabolites and Microbiota Composition in the Bovine Rumen

(2017) Henk J. van Lingen et al.   Frontiers in Microbiology

Methanogen Diversity in Indigenous and Introduced Ruminant Species on the Tibetan Plateau

(2016) Xiao Dan Huang et al.   ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL

Thermodynamic Driving Force of Hydrogen on Rumen Microbial Metabolism: A Theoretical Investigation

(2016) Henk J. van Lingen et al.   PLoS One

Enteric methane production, rumen volatile fatty acid concentrations, and milk fatty acid composition in lactating Holstein-Friesian cows fed grass silage- or corn silage-based diets

(2015) S. van Gastelen et al.   JOURNAL OF DAIRY SCIENCE

Characterising the bacterial microbiota across the gastrointestinal tracts of dairy cattle: membership and potential function

(2015) Shengyong Mao et al.   Scientific Reports

A Rapid and Economical Method for Efficient DNA Extraction from Diverse Soils Suitable for Metagenomic Applications

(2015) Selvaraju Gayathri Devi et al.   PLoS One

Anaerobic gut fungi: Advances in isolation, culture, and cellulolytic enzyme discovery for biofuel production

(2014) Charles H. Haitjema et al.   BIOTECHNOLOGY AND BIOENGINEERING

Anaerobic fungi (phylumNeocallimastigomycota): advances in understanding their taxonomy, life cycle, ecology, role and biotechnological potential

(2014) Robert J. Gruninger et al.   FEMS MICROBIOLOGY ECOLOGY

Iron fortification adversely affects the gut microbiome, increases pathogen abundance and induces intestinal inflammation in Kenyan infants

(2014) Tanja Jaeggi et al.   GUT

Internal Transcribed Spacer 1 Secondary Structure Analysis Reveals a Common Core throughout the Anaerobic Fungi (Neocallimastigomycota)

(2014) Christian Koetschan et al.   PLoS One

Determining the culturability of the rumen bacterial microbiome

(2014) Christopher J. Creevey et al.   Microbial Biotechnology

Strategies to reduce greenhouse gases from ruminant livestock

(2013) S. J. Meale et al.   ACTA AGRICULTURAE SCANDINAVICA SECTION A-ANIMAL SCIENCE

Effect of DNA extraction and sample preservation method on rumen bacterial population

(2013) Katerina Fliegerova et al.   ANAEROBE

Evaluation of bacterial and archaeal diversity in the rumen of Xiangxi yellow cattle (Bos taurus) fed Miscanthus sinensis or common mixed feedstuff

(2013) Yadan Li et al.   ANNALS OF MICROBIOLOGY

Rumen Methanogenic Genotypes Differ in Abundance According to Host Residual Feed Intake Phenotype and Diet Type

(2013) CIara A. Carberry et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A comprehensive metatranscriptome analysis pipeline and its validation using human small intestine microbiota datasets

(2013) Milkha M Leimena et al.   BMC GENOMICS

Diversity of human small intestinalStreptococcusandVeillonellapopulations

(2013) Bartholomeus van den Bogert et al.   FEMS MICROBIOLOGY ECOLOGY

Effect of DNA Extraction Methods and Sampling Techniques on the Apparent Structure of Cow and Sheep Rumen Microbial Communities

(2013) Gemma Henderson et al.   PLoS One

Comparison of DNA Extraction Methods in Analysis of Salivary Bacterial Communities

(2013) Vladimir Lazarevic et al.   PLoS One

“Methanoplasmatales,” Thermoplasmatales-Related Archaea in Termite Guts and Other Environments, Are the Seventh Order of Methanogens

(2012) Kristina Paul et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Bioreactor Performance and Quantitative Analysis of Methanogenic and Bacterial Community Dynamics in Microbial Electrolysis Cells during Large Temperature Fluctuations

(2012) Lu Lu et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

A Proposed Taxonomy of Anaerobic Fungi (Class Neocallimastigomycetes) Suitable for Large-Scale Sequence-Based Community Structure Analysis

(2012) Sandra Kittelmann et al.   PLoS One

Next Generation Sequencing to Define Prokaryotic and Fungal Diversity in the Bovine Rumen

(2012) Derrick E. Fouts et al.   PLoS One

Evaluation of DNA extraction methods of rumen microbial populations

(2012) Gabriela Villegas-Rivera et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Microarray Analysis and Barcoded Pyrosequencing Provide Consistent Microbial Profiles Depending on the Source of Human Intestinal Samples

(2011) Bartholomeus van den Bogert et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Isolation of natural cultures of anaerobic fungi and indigenously associated methanogens from herbivores and their bioconversion of lignocellulosic materials to methane

(2011) Wei Jin et al.   BIORESOURCE TECHNOLOGY

Microbiome analysis of dairy cows fed pasture or total mixed ration diets

(2011) Alexandre B. de Menezes et al.   FEMS MICROBIOLOGY ECOLOGY

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

(2011) B. J. Haas et al.   GENOME RESEARCH

Phylogenetic and metabolic diversity of bacteria associated with cystic fibrosis

(2010) Adam M Guss et al.   ISME Journal

Phylogenetic diversity and community structure of anaerobic gut fungi (phylum Neocallimastigomycota) in ruminant and non-ruminant herbivores

(2010) Audra S Liggenstoffer et al.   ISME Journal

Novel primers for 16S rRNA-based archaeal community analyses in environmental samples

(2010) Stephan Gantner et al.   JOURNAL OF MICROBIOLOGICAL METHODS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

The UNITE database for molecular identification of fungi - recent updates and future perspectives

(2010) Kessy Abarenkov et al.   NEW PHYTOLOGIST

Assessment of the Microbial Ecology of Ruminal Methanogens in Cattle with Different Feed Efficiencies

(2009) M. Zhou et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Diversity and activity of enriched ruminal cultures of anaerobic fungi and methanogens grown together on lignocellulose in consecutive batch culture

(2009) Yan Fen Cheng et al.   BIORESOURCE TECHNOLOGY

Diversity of anaerobic fungal populations in cattle revealed by selective enrichment culture using different carbon sources

(2009) G.W. Griffith et al.   Fungal Ecology

Structure of the Archaeal Community of the Rumen

(2008) P. H. Janssen et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Dynamics of initial colonization of nonconserved perennial ryegrass by anaerobic fungi in the bovine rumen

(2008) Joan E. Edwards et al.   FEMS MICROBIOLOGY ECOLOGY

Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex

(2008) Micah Hamady et al.   NATURE METHODS