Internal Transcribed Spacer 1 Secondary Structure Analysis Reveals a Common Core throughout the Anaerobic Fungi (Neocallimastigomycota)

Fungal systematics: is a new age of enlightenment at hand?

(2013) David S. Hibbett et al.   NATURE REVIEWS MICROBIOLOGY

Meeting Report: Fungal ITS Workshop (October 2012)

(2013) Scott T. Bates et al.   Standards in Genomic Sciences

Utilizing ITS1 and ITS2 to study environmental fungal diversity using pyrosequencing

(2012) Cécile Monard et al.   FEMS MICROBIOLOGY ECOLOGY

ITS2 Database IV: Interactive taxon sampling for internal transcribed spacer 2 based phylogenies

(2012) Christian Koetschan et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

‘Y’Scenedesmus(Chlorophyta, Chlorophyceae): the internal transcribed spacer 2 rRNA secondary structure re-revisited

(2012) S. M. Markert et al.   PLANT BIOLOGY

A Proposed Taxonomy of Anaerobic Fungi (Class Neocallimastigomycetes) Suitable for Large-Scale Sequence-Based Community Structure Analysis

(2012) Sandra Kittelmann et al.   PLoS One

Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi

(2012) C. L. Schoch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phylogeny of Oedogoniales, Chaetophorales and Chaetopeltidales (Chlorophyceae): inferences from sequence-structure analysis of ITS2

(2011) Mark A. Buchheim et al.   ANNALS OF BOTANY

Parmelia sulcata (Ascomycota: Parmeliaceae), a sympatric monophyletic species complex

(2011) Maria del Carmen MOLINA et al.   LICHENOLOGIST

A Consistent Phylogenetic Backbone for the Fungi

(2011) I. Ebersberger et al.   MOLECULAR BIOLOGY AND EVOLUTION

ITS-1 versus ITS-2 pyrosequencing: a comparison of fungal populations in truffle grounds

(2011) Antonietta Mello et al.   MYCOLOGIA

GenBank

(2011) D. A. Benson et al.   NUCLEIC ACIDS RESEARCH

Internal Transcribed Spacer 2 (nu ITS2 rRNA) Sequence-Structure Phylogenetics: Towards an Automated Reconstruction of the Green Algal Tree of Life

(2011) Mark A. Buchheim et al.   PLoS One

Newly resolved relationships in an early land plant lineage: Bryophyta class Sphagnopsida (peat mosses)

(2010) A. Jonathan Shaw et al.   AMERICAN JOURNAL OF BOTANY

Including RNA secondary structures improves accuracy and robustness in reconstruction of phylogenetic trees

(2010) Alexander Keller et al.   Biology Direct

Diversity of anaerobic fungi within cow manure determined by ITS1 analysis

(2010) K. Fliegerová et al.   FOLIA MICROBIOLOGICA

Phylogenetic diversity and community structure of anaerobic gut fungi (phylum Neocallimastigomycota) in ruminant and non-ruminant herbivores

(2010) Audra S Liggenstoffer et al.   ISME Journal

An RNA Conformational Switch Regulates Pre-18S rRNA Cleavage

(2010) Allison C. Lamanna et al.   JOURNAL OF MOLECULAR BIOLOGY

Secondary Structural Analyses of ITS1 in Paramecium

(2010) Ryo Hoshina   MICROBES AND ENVIRONMENTS

Molecular Characterization of Coprophilous Fungal Communities Reveals Sequences Related to Root-Associated Fungal Endophytes

(2010) José Herrera et al.   MICROBIAL ECOLOGY

The Impact of rRNA Secondary Structure Consideration in Alignment and Tree Reconstruction: Simulated Data and a Case Study on the Phylogeny of Hexapods

(2010) Harald O. Letsch et al.   MOLECULAR BIOLOGY AND EVOLUTION

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Secondary Structure Models for the Internal Transcribed Spacer (ITS) Region 1 from Symbiotic Dinoflagellates

(2010) Daniel J. Thornhill et al.   PROTIST

Diversity of anaerobic gut fungal populations analysed using ribosomal ITS1 sequences in faeces of wild and domesticated herbivores

(2009) Matthew J. Nicholson et al.   ANAEROBE

The ITS region as a target for characterization of fungal communities using emerging sequencing technologies

(2009) Rolf Henrik Nilsson et al.   FEMS MICROBIOLOGY LETTERS

ITS2 sequence–structure analysis in phylogenetics: A how-to manual for molecular systematics

(2009) Jörg Schultz et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

ProfDistS: (profile-) distance based phylogeny on sequence--structure alignments

(2008) M. Wolf et al.   BIOINFORMATICS

5.8S-28S rRNA interaction and HMM-based ITS2 annotation

(2008) Alexander Keller et al.   GENE