Genomic Characterization of Sulphite Reducing Bacteria Isolated From the Dairy Production Chain

Detection and Enumeration of Spore-Forming Bacteria in Powdered Dairy Products

(2017) Aoife J. McHugh et al.   Frontiers in Microbiology

Farm level survey of spore-forming bacteria on four dairy farms in the Waikato region of New Zealand

(2017) Tanushree B. Gupta et al.   MicrobiologyOpen

Reclassification of Clostridium difficile as Clostridioides difficile (Hall and O’Toole 1935) Prévot 1938

(2016) Paul A. Lawson et al.   ANAEROBE

The heat resistance and spoilage potential of aerobic mesophilic and thermophilic spore forming bacteria isolated from Chinese milk powders

(2016) Faizan A. Sadiq et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Seasonal occurrence and molecular diversity of clostridia species spores along cheesemaking streams of 5 commercial dairy plants

(2016) Jorge Bermúdez et al.   JOURNAL OF DAIRY SCIENCE

Prospects for improved control of dairy-relevant sporeformers using -omics technologies

(2016) Marjon HJ Wells-Bennik et al.   Current Opinion in Food Science

Roary: rapid large-scale prokaryote pan genome analysis

(2015) Andrew J. Page et al.   BIOINFORMATICS

Understanding the bacterial communities of hard cheese with blowing defect

(2015) Daniela Bassi et al.   FOOD MICROBIOLOGY

Anaerobic sporeformers and their significance with respect to milk and dairy products

(2015) Conor J. Doyle et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Spore populations among bulk tank raw milk and dairy powders are significantly different

(2015) Rachel A. Miller et al.   JOURNAL OF DAIRY SCIENCE

The Phyre2 web portal for protein modeling, prediction and analysis

(2015) Lawrence A Kelley et al.   Nature Protocols

Compact graphical representation of phylogenetic data and metadata with GraPhlAn

(2015) Francesco Asnicar et al.   PeerJ

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

Prevalence and characterization of foodborne pathogens from Australian dairy farm environments

(2014) Catherine M. McAuley et al.   JOURNAL OF DAIRY SCIENCE

Foodborne Disease Outbreaks Caused by Bacillus cereus, Clostridium perfringens, and Staphylococcus aureus--United States, 1998-2008

(2013) S. D. Bennett et al.   CLINICAL INFECTIOUS DISEASES

PhyloPhlAn is a new method for improved phylogenetic and taxonomic placement of microbes

(2013) Nicola Segata et al.   Nature Communications

Identification and Characterization of Psychrotolerant Sporeformers Associated with Fluid Milk Production and Processing

(2012) Reid A. Ivy et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

(2012) Y. Peng et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Jalview Version 2--a multiple sequence alignment editor and analysis workbench

(2009) A. M. Waterhouse et al.   BIOINFORMATICS

Clostridium sulfidigenes sp. nov., a mesophilic, proteolytic, thiosulfate- and sulfur-reducing bacterium isolated from pond sediment

(2009) A. Sallam et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Presence of Soil-Dwelling Clostridia in Commercial Powdered Infant Formulas

(2009) Jason R. Barash et al.   JOURNAL OF PEDIATRICS

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

(2009) M. N. Price et al.   MOLECULAR BIOLOGY AND EVOLUTION

L-Cysteine is required for induced antibiotic resistance in actively swarming Salmonella enterica serovar Typhimurium

(2008) A. L. Turnbull et al.   MICROBIOLOGY-SGM