Analyzing AbrB-Knockout Effects through Genome and Transcriptome Sequencing of Bacillus licheniformis DW2

antiSMASH 4.0—improvements in chemistry prediction and gene cluster boundary identification

(2017) Kai Blin et al.   NUCLEIC ACIDS RESEARCH

Untangling the transcription regulatory network of the bacitracin synthase operon in Bacillus licheniformis DW2

(2017) Dong Wang et al.   RESEARCH IN MICROBIOLOGY

Complete genome sequence of Bacillus subtilis BSD-2, a microbial germicide isolated from cultivated cotton

(2016) Hongwei Liu et al.   JOURNAL OF BIOTECHNOLOGY

The Role of DNA Restriction-Modification Systems in the Biology of Bacillus anthracis

(2016) Ramakrishnan Sitaraman   Frontiers in Microbiology

DNA methylation in bacteria: from the methyl group to the methylome

(2015) María A Sánchez-Romero et al.   CURRENT OPINION IN MICROBIOLOGY

Comprehensive transcriptome and improved genome annotation ofBacillus licheniformisWX-02

(2015) Jing Guo et al.   FEBS LETTERS

Function of the SpoVAEa and SpoVAF Proteins of Bacillus subtilis Spores

(2014) A. Perez-Valdespino et al.   JOURNAL OF BACTERIOLOGY

Expanded microbial genome coverage and improved protein family annotation in the COG database

(2014) Michael Y. Galperin et al.   NUCLEIC ACIDS RESEARCH

Gene Ontology Consortium: going forward

(2014)   NUCLEIC ACIDS RESEARCH

REBASE—a database for DNA restriction and modification: enzymes, genes and genomes

(2014) Richard J. Roberts et al.   NUCLEIC ACIDS RESEARCH

Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data

(2013) Chen-Shan Chin et al.   NATURE METHODS

DOOR 2.0: presenting operons and their functions through dynamic and integrated views

(2013) Xizeng Mao et al.   NUCLEIC ACIDS RESEARCH

Genome-Wide and Cell-Specific Epigenetic Analysis Challenges the Role of Polycomb in Drosophila Spermatogenesis

(2013) Sherif El-Sharnouby et al.   PLoS Genetics

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Direct detection of DNA methylation during single-molecule, real-time sequencing

(2010) Benjamin A Flusberg et al.   NATURE METHODS

Principles and challenges of genome-wide DNA methylation analysis

(2010) Peter W. Laird   NATURE REVIEWS GENETICS

Genome-wide binding profiles of the Bacillus subtilis transition state regulator AbrB and its homolog Abh reveals their interactive role in transcriptional regulation

(2010) Onuma Chumsakul et al.   NUCLEIC ACIDS RESEARCH

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

(2010) Aaron E. Darling et al.   PLoS One

Efficient production of acetoin by the newly isolated Bacillus licheniformis strain MEL09

(2010) Yongfeng Liu et al.   PROCESS BIOCHEMISTRY

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

The RAST Server: Rapid Annotations using Subsystems Technology

(2008) Ramy K Aziz et al.   BMC GENOMICS

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

Parallel pathways of repression and antirepression governing the transition to stationary phase in Bacillus subtilis

(2008) A. V. Banse et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA