Mycobiome of Cysts of the Soybean Cyst Nematode Under Long Term Crop Rotation

Soil microbial communities in cucumber monoculture and rotation systems and their feedback effects on cucumber seedling growth

(2017) Xingang Zhou et al.   PLANT AND SOIL

Mortierella alpina CS10E4, an oleaginous fungal endophyte of Crocus sativus L. enhances apocarotenoid biosynthesis and stress tolerance in the host plant

(2017) Zahoor Ahmed Wani et al.   Scientific Reports

Determining the Role of Plant-Parasitic Nematodes in the Corn–Soybean Crop Rotation Yield Effect Using Nematicide Application: II. Soybean

(2016) Zane J. Grabau et al.   AGRONOMY JOURNAL

Influence of long-term corn–soybean crop sequences on soil ecology as indicated by the nematode community

(2016) Zane J. Grabau et al.   APPLIED SOIL ECOLOGY

FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild

(2016) Nhu H. Nguyen et al.   Fungal Ecology

Systematic improvement of amplicon marker gene methods for increased accuracy in microbiome studies

(2016) Daryl M Gohl et al.   NATURE BIOTECHNOLOGY

Towards a unified paradigm for sequence-based identification of fungi

(2013) Urmas Kõljalg et al.   MOLECULAR ECOLOGY

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

The rhizosphere microbiome and plant health

(2012) Roeland L. Berendsen et al.   TRENDS IN PLANT SCIENCE

Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi

(2012) Robin A. Ohm et al.   PLoS Pathogens

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Incorporation of plant residue-derived carbon into the microeukaryotic community in a rice field soil revealed by DNA stable-isotope probing

(2011) Jun Murase et al.   FEMS MICROBIOLOGY ECOLOGY

Response of soil microbial communities to different management practices in surface soils of a soybean agroecosystem in Argentina

(2010) S. Vargas Gil et al.   EUROPEAN JOURNAL OF SOIL BIOLOGY

Echinochlamydosporium variabile, a new genus and species of Zygomycota from soil nematodes

(2010) Xianzhi Jiang et al.   FUNGAL DIVERSITY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Members of soil bacterial communities sensitive to tillage and crop rotation

(2010) Chuntao Yin et al.   SOIL BIOLOGY & BIOCHEMISTRY

A class-wide phylogenetic assessment of Dothideomycetes

(2010) C.L. Schoch et al.   STUDIES IN MYCOLOGY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere

(2009) Gabriele Berg et al.   FEMS MICROBIOLOGY ECOLOGY

The living strategy of nematophagous fungi

(2009) Xingzhong Liu et al.   MYCOSCIENCE

Effect of monoculture soybean on soil microbial community in the Northeast China

(2009) Chunge Li et al.   PLANT AND SOIL

The influence of soil properties on the structure of bacterial and fungal communities across land-use types

(2008) Christian L. Lauber et al.   SOIL BIOLOGY & BIOCHEMISTRY