Soil microbial communities in cucumber monoculture and rotation systems and their feedback effects on cucumber seedling growth

Plant community richness and microbial interactions structure bacterial communities in soil

(2015) Daniel C. Schlatter et al.   ECOLOGY

Crop rotational diversity enhances belowground communities and functions in an agroecosystem

(2015) L. K. Tiemann et al.   ECOLOGY LETTERS

Plant identity drives the expression of biocontrol factors in a rhizosphere bacterium across a plant diversity gradient

(2015) Ellen Latz et al.   FUNCTIONAL ECOLOGY

An extended single-index multiplexed 16S rRNA sequencing for microbial community analysis on MiSeq illumina platforms

(2015) Hooman Derakhshani et al.   JOURNAL OF BASIC MICROBIOLOGY

Bacterial community shift along with the changes in operational conditions in a membrane-aerated biofilm reactor

(2014) Hai-Long Tian et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Intercropping enhances soil carbon and nitrogen

(2014) Wen-Feng Cong et al.   GLOBAL CHANGE BIOLOGY

Predicting the responsiveness of soil biodiversity to deforestation: a cross-biome study

(2014) Thomas W. Crowther et al.   GLOBAL CHANGE BIOLOGY

Relocation, high-latitude warming and host genetic identity shape the foliar fungal microbiome of poplars

(2014) Miklós Bálint et al.   MOLECULAR ECOLOGY

Soil biodiversity and soil community composition determine ecosystem multifunctionality

(2014) C. Wagg et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible

(2014) Paul J. McMurdie et al.   PLoS Computational Biology

Unifying the analysis of high-throughput sequencing datasets: characterizing RNA-seq, 16S rRNA gene sequencing and selective growth experiments by compositional data analysis

(2014) Andrew D Fernandes et al.   Microbiome

Detection and quantification of Fusarium oxysporum f. sp. cucumerinum in environmental samples using a specific quantitative PCR assay

(2013) Kelly Scarlett et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

Application of Natural Blends of Phytochemicals Derived from the Root Exudates ofArabidopsisto the Soil Reveal That Phenolic-related Compounds Predominantly Modulate the Soil Microbiome

(2013) Dayakar V. Badri et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Plant-soil feedbacks: the past, the present and future challenges

(2013) Wim H. van der Putten et al.   JOURNAL OF ECOLOGY

Towards a unified paradigm for sequence-based identification of fungi

(2013) Urmas Kõljalg et al.   MOLECULAR ECOLOGY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Plant monocultures produce more antagonistic soil Streptomyces communities than high-diversity plant communities

(2013) Matthew G. Bakker et al.   SOIL BIOLOGY & BIOCHEMISTRY

Irrigation Differentially Impacts Populations of Indigenous Antibiotic-Producing Pseudomonas spp. in the Rhizosphere of Wheat

(2012) Olga V. Mavrodi et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Soil phenolics in a continuously mono-cropped cucumber (Cucumis sativus L.) system and their effects on cucumber seedling growth and soil microbial communities

(2012) X. Zhou et al.   EUROPEAN JOURNAL OF SOIL SCIENCE

Consistent effects of nitrogen amendments on soil microbial communities and processes across biomes

(2012) Kelly S. Ramirez et al.   GLOBAL CHANGE BIOLOGY

Plant diversity improves protection against soil-borne pathogens by fostering antagonistic bacterial communities

(2012) Ellen Latz et al.   JOURNAL OF ECOLOGY

Biodiversity loss and its impact on humanity

(2012) Bradley J. Cardinale et al.   NATURE

Regulation of fungal secondary metabolism

(2012) Axel A. Brakhage   NATURE REVIEWS MICROBIOLOGY

Growth response of crops to soil microbial communities from conventional monocropping and tree-based intercropping systems

(2012) L. D. Bainard et al.   PLANT AND SOIL

Soil microbial diversity and agro-ecosystem functioning

(2012) Marcel G. A. van der Heijden et al.   PLANT AND SOIL

p-Coumaric Acid Influenced Cucumber Rhizosphere Soil Microbial Communities and the Growth of Fusarium oxysporum f.sp. cucumerinum Owen

(2012) Xingang Zhou et al.   PLoS One

Unexpected nondenitrifier nitrous oxide reductase gene diversity and abundance in soils

(2012) R. A. Sanford et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Monitoring of the relation between 2,4-diacetylphloroglucinol-producing Pseudomonas and Thielaviopsis basicola populations by real-time PCR in tobacco black root-rot suppressive and conducive soils

(2012) Juliana Almario et al.   SOIL BIOLOGY & BIOCHEMISTRY

Efficient soil microorganisms: A new dimension for sustainable agriculture and environmental development

(2011) Jay Shankar Singh et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Effects of intercropping cucumber with onion or garlic on soil enzyme activities, microbial communities and cucumber yield

(2011) Xingang Zhou et al.   EUROPEAN JOURNAL OF SOIL BIOLOGY

Provision of contrasting ecosystem services by soil communities from different agricultural fields

(2011) Erik Verbruggen et al.   PLANT AND SOIL

Plant diversity effects on soil microorganisms support the singular hypothesis

(2010) N. Eisenhauer et al.   ECOLOGY

Soil microbes drive the classic plant diversity–productivity pattern

(2010) Stefan A. Schnitzer et al.   ECOLOGY

Soil fungal pathogens and the relationship between plant diversity and productivity

(2010) John L. Maron et al.   ECOLOGY LETTERS

Plant-soil feedback: experimental approaches, statistical analyses and ecological interpretations

(2010) E. Pernilla Brinkman et al.   JOURNAL OF ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Pyrosequencing-Based Assessment of Soil pH as a Predictor of Soil Bacterial Community Structure at the Continental Scale

(2009) C. L. Lauber et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Phenazine antibiotics produced by fluorescent pseudomonads contribute to natural soil suppressiveness to Fusarium wilt

(2009) Sylvie Mazurier et al.   ISME Journal

Stable isotope probing reveals Trichosporon yeast to be active in situ in soil phenol metabolism

(2008) Christopher M DeRito et al.   ISME Journal