Physicochemical Drivers of Microbial Community Structure in Sediments of Lake Hazen, Nunavut, Canada

The world’s largest High Arctic lake responds rapidly to climate warming

(2018) Igor Lehnherr et al.   Nature Communications

Response of Soil Microbial Communities to Elevated Antimony and Arsenic Contamination Indicates the Relationship between the Innate Microbiota and Contaminant Fractions

(2017) Weimin Sun et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Genome Sequence of Desulfurella amilsii Strain TR1 and Comparative Genomics of Desulfurellaceae Family

(2017) Anna P. Florentino et al.   Frontiers in Microbiology

Hidden biofilms in a far northern lake and implications for the changing Arctic

(2017) Vani Mohit et al.   npj Biofilms and Microbiomes

Decoupling function and taxonomy in the global ocean microbiome

(2016) S. Louca et al.   SCIENCE

High occurrence of Pacearchaeota and Woesearchaeota (Archaea superphylum DPANN) in the surface waters of oligotrophic high-altitude lakes

(2016) Rudiger Ortiz-Alvarez et al.   Environmental Microbiology Reports

Inherent bacterial DNA contamination of extraction and sequencing reagents may affect interpretation of microbiota in low bacterial biomass samples

(2016) Angela Glassing et al.   Gut Pathogens

Machine Learning Meta-analysis of Large Metagenomic Datasets: Tools and Biological Insights

(2016) Edoardo Pasolli et al.   PLoS Computational Biology

Unanticipated Geochemical and Microbial Community Structure under Seasonal Ice Cover in a Dilute, Dimictic Arctic Lake

(2016) Ursel M. E. Schütte et al.   Frontiers in Microbiology

Upstream Freshwater and Terrestrial Sources Are Differentially Reflected in the Bacterial Community Structure along a Small Arctic River and Its Estuary

(2016) Aviaja L. Hauptmann et al.   Frontiers in Microbiology

Diversity and Composition of Bacterial Community in Soils and Lake Sediments from an Arctic Lake Area

(2016) Neng Fei Wang et al.   Frontiers in Microbiology

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

Relic DNA is abundant in soil and obscures estimates of soil microbial diversity

(2016) Paul Carini et al.   Nature Microbiology

High taxonomic variability despite stable functional structure across microbial communities

(2016) Stilianos Louca et al.   Nature Ecology & Evolution

Tax4Fun: predicting functional profiles from metagenomic 16S rRNA data: Fig. 1.

(2015) Kathrin P. Aßhauer et al.   BIOINFORMATICS

Hydrogen sulfide can inhibit and enhance oxygenic photosynthesis in a cyanobacterium from sulfidic springs

(2015) Judith M. Klatt et al.   ENVIRONMENTAL MICROBIOLOGY

Ice cover extent drives phytoplankton and bacterial community structure in a large north-temperate lake: implications for a warming climate

(2015) B. F. N. Beall et al.   ENVIRONMENTAL MICROBIOLOGY

Microbial DNA records historical delivery of anthropogenic mercury

(2015) Alexandre J Poulain et al.   ISME Journal

Swarm v2: highly-scalable and high-resolution amplicon clustering

(2015) Frédéric Mahé et al.   PeerJ

Distribution of sediment bacterial and archaeal communities in plateau freshwater lakes

(2014) Jingxu Zhang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Limnological Characteristics of a High Arctic Oasis and Comparisons across Northern Ellesmere Island

(2014) Bronwyn E. Keatley et al.   ARCTIC

Bathymetry and Sediment Geochemistry of Lake Hazen (Quttinirpaaq National Park, Ellesmere Island, Nunavut)

(2014) G. Köck et al.   ARCTIC

Reagent and laboratory contamination can critically impact sequence-based microbiome analyses

(2014) Susannah J Salter et al.   BMC BIOLOGY

Evidence of in situ microbial activity and sulphidogenesis in perennially sub-0 °C and hypersaline sediments of a high Arctic permafrost spring

(2014) Guillaume Lamarche-Gagnon et al.   EXTREMOPHILES

A guide to statistical analysis in microbial ecology: a community-focused, living review of multivariate data analyses

(2014) Pier Luigi Buttigieg et al.   FEMS MICROBIOLOGY ECOLOGY

Which is more important for classifying microbial communities: who’s there or what they can do?

(2014) Zhenjiang Xu et al.   ISME Journal

Distributions and Biomass of Benthic Ciliates, Foraminifera and Amoeboid Protists in Marine, Brackish, and Freshwater Sediments

(2014) Yan-Li Lei et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Microbial Community Structure in Lake and Wetland Sediments from a High Arctic Polar Desert Revealed by Targeted Transcriptomics

(2014) Magdalena K. Stoeva et al.   PLoS One

Choosing and using diversity indices: insights for ecological applications from the German Biodiversity Exploratories

(2014) E. Kathryn Morris et al.   Ecology and Evolution

Global response of glacier runoff to twenty-first century climate change

(2014) Andrew Bliss et al.   JOURNAL OF GEOPHYSICAL RESEARCH-EARTH SURFACE

PEAR: a fast and accurate Illumina Paired-End reAd mergeR

(2013) J. Zhang et al.   BIOINFORMATICS

Mercury Methylation by Novel Microorganisms from New Environments

(2013) Cynthia C. Gilmour et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Patterns and Processes of Microbial Community Assembly

(2013) D. R. Nemergut et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

Differential abundance analysis for microbial marker-gene surveys

(2013) Joseph N Paulson et al.   NATURE METHODS

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Bacterial and Archaeal Diversity in Sediments of West Lake Bonney, McMurdo Dry Valleys, Antarctica

(2012) Chao Tang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes

(2012) Elmar Pruesse et al.   BIOINFORMATICS

Unipro UGENE: a unified bioinformatics toolkit

(2012) Konstantin Okonechnikov et al.   BIOINFORMATICS

Data mining in the Life Sciences with Random Forest: a walk in the park or lost in the jungle?

(2012) W. G. Touw et al.   BRIEFINGS IN BIOINFORMATICS

Geographic distance and pH drive bacterial distribution in alkaline lake sediments across Tibetan Plateau

(2012) Jinbo Xiong et al.   ENVIRONMENTAL MICROBIOLOGY

Methylmercury Cycling in High Arctic Wetland Ponds: Controls on Sedimentary Production

(2012) Igor Lehnherr et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Contemporary environmental variation determines microbial diversity patterns in acid mine drainage

(2012) Jia-Liang Kuang et al.   ISME Journal

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

PCR Biases Distort Bacterial and Archaeal Community Structure in Pyrosequencing Datasets

(2012) Ameet J. Pinto et al.   PLoS One

Fermentation, Hydrogen, and Sulfur Metabolism in Multiple Uncultivated Bacterial Phyla

(2012) K. C. Wrighton et al.   SCIENCE

Which sequencing depth is sufficient to describe patterns in bacterial α- and β-diversity?

(2012) Daniel Lundin et al.   Environmental Microbiology Reports

Benthic Cyanobacterial Mats in the High Arctic: Multi-Layer Structure and Fluorescence Responses to Osmotic Stress

(2012) Marie Lionard et al.   Frontiers in Microbiology

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

High Arctic lakes as sentinel ecosystems: Cascading regime shifts in climate, ice cover, and mixing

(2011) Derek R. Mueller et al.   LIMNOLOGY AND OCEANOGRAPHY

Intracellular Rickettsiales: Insights into manipulators of eukaryotic cells

(2011) Aurélie Renvoisé et al.   TRENDS IN MOLECULAR MEDICINE

Environmental and Gut Bacteroidetes: The Food Connection

(2011) François Thomas et al.   Frontiers in Microbiology

Microbial communities acclimate to recurring changes in soil redox potential status

(2010) Kristen M. DeAngelis et al.   ENVIRONMENTAL MICROBIOLOGY

Increased Accumulation of Sulfur in Lake Sediments of the High Arctic

(2010) Paul E. Drevnick et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Effects of retrogressive permafrost thaw slumping on sediment chemistry and submerged macrophytes in Arctic tundra lakes

(2010) PATRÍCIA S. MESQUITA et al.   FRESHWATER BIOLOGY

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Three Genomes from the Phylum Acidobacteria Provide Insight into the Lifestyles of These Microorganisms in Soils

(2009) N. L. Ward et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

A comparison of random forest and its Gini importance with standard chemometric methods for the feature selection and classification of spectral data

(2009) Bjoern H Menze et al.   BMC BIOINFORMATICS

Methanosphaerula palustris gen. nov., sp. nov., a hydrogenotrophic methanogen isolated from a minerotrophic fen peatland

(2009) H. Cadillo-Quiroz et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Differences in soil bacterial diversity: driven by contemporary disturbances or historical contingencies?

(2008) Yuan Ge et al.   ISME Journal