High taxonomic variability despite stable functional structure across microbial communities

Genome-centric resolution of microbial diversity, metabolism and interactions in anaerobic digestion

(2016) Inka Vanwonterghem et al.   ENVIRONMENTAL MICROBIOLOGY

Global biogeography of microbial nitrogen-cycling traits in soil

(2016) Michaeline B. Nelson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Decoupling function and taxonomy in the global ocean microbiome

(2016) S. Louca et al.   SCIENCE

MetaPathways v2.5: quantitative functional, taxonomic and usability improvements: Fig. 1.

(2015) Kishori M. Konwar et al.   BIOINFORMATICS

Predicting the response of the deep-ocean microbiome to geochemical perturbations by hydrothermal vents

(2015) Daniel C Reed et al.   ISME Journal

Contribution of neutral processes to the assembly of gut microbial communities in the zebrafish over host development

(2015) Adam R Burns et al.   ISME Journal

Stable and sporadic symbiotic communities of coral and algal holobionts

(2015) Eric R Hester et al.   ISME Journal

Dispersing misconceptions and identifying opportunities for the use of 'omics' in soil microbial ecology

(2015) James I. Prosser   NATURE REVIEWS MICROBIOLOGY

Structure and function of the global ocean microbiome

(2015) S. Sunagawa et al.   SCIENCE

Brazil's drought: Beware deforestation

(2015) A. G. Nazareno et al.   SCIENCE

Determinants of community structure in the global plankton interactome

(2015) G. Lima-Mendez et al.   SCIENCE

Application of a Neutral Community Model To Assess Structuring of the Human Lung Microbiome

(2015) Arvind Venkataraman et al.   mBio

Deterministic processes vary during community assembly for ecologically dissimilar taxa

(2015) Jeff R. Powell et al.   Nature Communications

Deterministic processes guide long-term synchronised population dynamics in replicate anaerobic digesters

(2014) Inka Vanwonterghem et al.   ISME Journal

Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences

(2014) Pablo Yarza et al.   NATURE REVIEWS MICROBIOLOGY

Two coexisting tank bromeliads host distinct algal communities on a tropical inselberg

(2014) J.-F. Carrias et al.   PLANT BIOLOGY

A fast and unbiased procedure to randomize ecological binary matrices with fixed row and column totals

(2014) Giovanni Strona et al.   Nature Communications

Fluorescence spectroscopy and multi-way techniques. PARAFAC

(2013) Kathleen R. Murphy et al.   Analytical Methods

OpenFluor– an online spectral library of auto-fluorescence by organic compounds in the environment

(2013) Kathleen R. Murphy et al.   Analytical Methods

Environmental Applications of Excitation-Emission Spectrofluorimetry: An In-Depth Review II

(2013) Áurea Andrade-Eiroa et al.   APPLIED SPECTROSCOPY REVIEWS

Evaluating the distribution of terrestrial dissolved organic matter in a complex coastal ecosystem using fluorescence spectroscopy

(2013) Youhei Yamashita et al.   CONTINENTAL SHELF RESEARCH

Species matter: the role of competition in the assembly of congeneric bacteria

(2013) Alexander F Koeppel et al.   ISME Journal

Predator-induced reduction of freshwater carbon dioxide emissions

(2013) Trisha B. Atwood et al.   Nature Geoscience

RefSeq microbial genomes database: new representation and annotation strategy

(2013) Tatiana Tatusova et al.   NUCLEIC ACIDS RESEARCH

Ultrafast clustering algorithms for metagenomic sequence analysis

(2012) W. Li et al.   BRIEFINGS IN BIOINFORMATICS

Ecological determinism increases with organism size

(2012) Vinicius F. Farjalla et al.   ECOLOGY

Aquatic macroinvertebrate community composition in tank-bromeliads is determined by bromeliad species and its constrained characteristics

(2012) Nicholas A. C. Marino et al.   Insect Conservation and Diversity

Archaea of the Miscellaneous Crenarchaeotal Group are abundant, diverse and widespread in marine sediments

(2012) Kyoko Kubo et al.   ISME Journal

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Structure, function and diversity of the healthy human microbiome

(2012)   NATURE

Trait but not species convergence during plant community assembly in restored semi-natural grasslands

(2012) Kenny Helsen et al.   OIKOS

Cross-biome metagenomic analyses of soil microbial communities and their functional attributes

(2012) N. Fierer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bacteriophage ecology in environmental biotechnology processes

(2011) Orr H Shapiro et al.   CURRENT OPINION IN BIOTECHNOLOGY

Organic Matter Fluorescence in Municipal Water Recycling Schemes: Toward a Unified PARAFAC Model

(2011) Kathleen R. Murphy et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Dissolved organic matter composition and photoreactivity in prairie lakes of the U.S. Great Plains

(2011) Christopher L. Osburn et al.   LIMNOLOGY AND OCEANOGRAPHY

Characterizing dissolved organic matter fluorescence with parallel factor analysis: a tutorial

(2011) Colin A. Stedmon et al.   LIMNOLOGY AND OCEANOGRAPHY-METHODS

Global trends in the fluorescence characteristics and distribution of marine dissolved organic matter

(2011) Linda Jørgensen et al.   MARINE CHEMISTRY

Toward molecular trait-based ecology through integration of biogeochemical, geographical and metagenomic data

(2011) J. Raes et al.   Molecular Systems Biology

Disentangling the importance of ecological niches from stochastic processes across scales

(2011) J. M. Chase et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Bacterial community assembly based on functional genes rather than species

(2011) C. Burke et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Seasonal dynamics of soil respiration and N mineralization in chronically warmed and fertilized soils

(2011) A. R. Contosta et al.   Ecosphere

Bromeliad Catchments as Habitats for Methanogenesis in Tropical Rainforest Canopies

(2011) Shana K. Goffredi et al.   Frontiers in Microbiology

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

The Jungle of Methods for Evaluating Phenotypic and Phylogenetic Structure of Communities

(2010) Juli G. Pausas et al.   BIOSCIENCE

Null model analysis of species associations using abundance data

(2010) Werner Ulrich et al.   ECOLOGY

Aquatic Microbial Habitats Within a Neotropical Rainforest: Bromeliads and pH-Associated Trends in Bacterial Diversity and Composition

(2010) Shana K. Goffredi et al.   MICROBIAL ECOLOGY

Methane emissions from tank bromeliads in neotropical forests

(2010) Guntars O. Martinson et al.   Nature Geoscience

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Combined niche and neutral effects in a microbial wastewater treatment community

(2010) I. D. Ofiteru et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Inferring clocks when lacking rocks: the variable rates of molecular evolution in bacteria

(2009) Chih-Horng Kuo et al.   Biology Direct

Testing the functional significance of microbial community composition

(2009) Michael S. Strickland et al.   ECOLOGY

Microbial community dynamics in a seasonally anoxic fjord: Saanich Inlet, British Columbia

(2009) Elena Zaikova et al.   ENVIRONMENTAL MICROBIOLOGY

Towards a consistent classification scheme for geochemical environments, or, why we wish the term ‘suboxic’ would go away

(2009) D. E. CANFIELD et al.   Geobiology

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

(2009) M. N. Price et al.   MOLECULAR BIOLOGY AND EVOLUTION

A Two-Stage Probabilistic Approach to Multiple-Community Similarity Indices

(2008) Anne Chao et al.   BIOMETRICS

Taxonomic resolution, ecotypes and the biogeography ofProchlorococcus

(2008) Adam C. Martiny et al.   ENVIRONMENTAL MICROBIOLOGY

Microbial Ecology of Ocean Biogeochemistry: A Community Perspective

(2008) S. L. Strom   SCIENCE

The Microbial Engines That Drive Earth's Biogeochemical Cycles

(2008) P. G. Falkowski et al.   SCIENCE