A Large-Scale Comparative Metagenomic Study Reveals the Functional Interactions in Six Bloom-Forming Microcystis-Epibiont Communities

Bacterial social interactions and the emergence of community-intrinsic properties

(2018) Jonas Stenløkke Madsen et al.   CURRENT OPINION IN MICROBIOLOGY

Metagenomic analysis reveals potential interactions in an artificial coculture

(2017) Minglei Ren et al.   AMB Express

MOCAT2: a metagenomic assembly, annotation and profiling framework

(2016) Jens Roat Kultima et al.   BIOINFORMATICS

Deep metagenome and metatranscriptome analyses of microbial communities affiliated with an industrial biogas fermenter, a cow rumen, and elephant feces reveal major differences in carbohydrate hydrolysis strategies

(2016) Simon Güllert et al.   Biotechnology for Biofuels

MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data

(2016) Daniel H. Huson et al.   PLoS Computational Biology

Metagenomic Analysis Reveals Symbiotic Relationship among Bacteria in Microcystis-Dominated Community

(2016) Meili Xie et al.   Frontiers in Microbiology

Bacterial Communities Associated with Four Cyanobacterial Genera Display Structural and Functional Differences: Evidence from an Experimental Approach

(2016) Lin Zhu et al.   Frontiers in Microbiology

Role of bacteria in the production and degradation ofMicrocystiscyanopeptides

(2016) Enora Briand et al.   MicrobiologyOpen

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

(2015) Donovan H. Parks et al.   GENOME RESEARCH

The vocabulary of microbiome research: a proposal

(2015) Julian R. Marchesi et al.   Microbiome

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Characterization of Organic Phosphorus in Lake Sediments by Sequential Fractionation and Enzymatic Hydrolysis

(2013) Yuanrong Zhu et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Harmful Cyanobacterial Blooms: Causes, Consequences, and Controls

(2013) Hans W. Paerl et al.   MICROBIAL ECOLOGY

Limnobacter spp. as newly detected phenol-degraders among Baltic Sea surface water bacteria characterised by comparative analysis of catabolic genes

(2013) Eve Vedler et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Bacterial communities associated withMicrocystiscolonies differ from free-living communities living in the same ecosystem

(2013) Bushra Parveen et al.   Environmental Microbiology Reports

Spatial distribution of subfossil Chironomidae in surface sediments of a large, shallow and hypertrophic lake (Taihu, SE China)

(2012) Yanmin Cao et al.   HYDROBIOLOGIA

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Structure, function and diversity of the healthy human microbiome

(2012)   NATURE

Contribution of cryptogamic covers to the global cycles of carbon and nitrogen

(2012) Wolfgang Elbert et al.   Nature Geoscience

Bacterial Communities in the Sediments of Dianchi Lake, a Partitioned Eutrophic Waterbody in China

(2012) Yaohui Bai et al.   PLoS One

Metagenome of microorganisms associated with the toxic Cyanobacteria Microcystis aeruginosa analyzed using the 454 sequencing platform

(2011) Nan Li et al.   CHINESE JOURNAL OF OCEANOLOGY AND LIMNOLOGY

Temperature and biotic factors influence bacterial communities associated with the cyanobacteriumMicrocystissp.

(2011) Claudia Dziallas et al.   ENVIRONMENTAL MICROBIOLOGY

Genomic analysis of the potential for aromatic compounds biodegradation in Burkholderiales

(2011) Danilo Pérez-Pantoja et al.   ENVIRONMENTAL MICROBIOLOGY

Morphological and physiological changes in Microcystis aeruginosa as a result of interactions with heterotrophic bacteria

(2011) HONG SHEN et al.   FRESHWATER BIOLOGY

Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage

(2011) Chris L Dupont et al.   ISME Journal

Community Structure of Bacteria Associated withMicrocystisColonies from Cyanobacterial Blooms

(2011) Limei Shia et al.   JOURNAL OF FRESHWATER ECOLOGY

Insights into the Evolution of Vitamin B12 Auxotrophy from Sequenced Algal Genomes

(2011) K. E. Helliwell et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phytoplankton community succession shaping bacterioplankton community composition in Lake Taihu, China

(2011) Yuan Niu et al.   WATER RESEARCH

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Hierarchical eco-restoration: A systematical approach to removal of COD and dissolved nutrients from an intensive agricultural area

(2010) Yonghong Wu et al.   ENVIRONMENTAL POLLUTION

Mechanism study on the frequent variations of cell-bound microcystins in cyanobacterial blooms in Lake Taihu: Implications for water quality monitoring and assessments

(2009) Wei Chen et al.   CHEMOSPHERE

Metagenomic approach studying the taxonomic and functional diversity of the bacterial community in a mesotrophic lake (Lac du Bourget - France)

(2009) Didier Debroas et al.   ENVIRONMENTAL MICROBIOLOGY

The effects of temperature and nutrients on the growth and dynamics of toxic and non-toxic strains of Microcystis during cyanobacteria blooms

(2009) Timothy W. Davis et al.   HARMFUL ALGAE

Sphingobium quisquiliarum sp. nov., a hexachlorocyclohexane (HCH)-degrading bacterium isolated from an HCH-contaminated soil

(2009) K. Bala et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Bacterial and archaeal assemblages in sediments of a large shallow freshwater lake, Lake Taihu, as revealed by denaturing gradient gel electrophoresis

(2009) F.H. Liu et al.   JOURNAL OF APPLIED MICROBIOLOGY

Phylogenetic diversity and specificity of bacteria associated with Microcystis aeruginosa and other cyanobacteria

(2009) Limei SHI et al.   JOURNAL OF ENVIRONMENTAL SCIENCES

CVTree update: a newly designed phylogenetic study platform using composition vectors and whole genomes

(2009) Z. Xu et al.   NUCLEIC ACIDS RESEARCH

Genome Project Standards in a New Era of Sequencing

(2009) P. S. G. Chain et al.   SCIENCE

Degradation of hydrocarbons and their derivatives by a microbial association on the base of Canadian pondweed

(2008) Yu. A. Tumaikina et al.   APPLIED BIOCHEMISTRY AND MICROBIOLOGY

Diversity, ecology, and genomics of the Roseobacter clade: a short overview

(2008) Thorsten Brinkhoff et al.   ARCHIVES OF MICROBIOLOGY

High diversity of cultivable heterotrophic bacteria in association with cyanobacterial water blooms

(2008) Katri A Berg et al.   ISME Journal