Endogenous retroviruses of non-avian/mammalian vertebrates illuminate diversity and deep history of retroviruses

The evolutionary history of vertebrate RNA viruses

(2018) Mang Shi et al.   NATURE

The Expanding Diversity of RNA Viruses in Vertebrates

(2018) Wenqiang Wang et al.   TRENDS IN MICROBIOLOGY

Marine origin of retroviruses in the early Palaeozoic Era

(2017) Pakorn Aiewsakun et al.   Nature Communications

Origin of the retroviruses: when, where, and how?

(2017) Alexander Hayward   Current Opinion in Virology

Comparative analysis estimates the relative frequencies of co-divergence and cross-species transmission within viral families

(2017) Jemma L. Geoghegan et al.   PLoS Pathogens

Endogenous Retroviruses in Fish Genomes: From Relics of Past Infections to Evolutionary Innovations?

(2016) Magali Naville et al.   Frontiers in Microbiology

Tree of Life Reveals Clock-Like Speciation and Diversification

(2015) S. Blair Hedges et al.   MOLECULAR BIOLOGY AND EVOLUTION

Extensive retroviral diversity in shark

(2015) Guan-Zhu Han   Retrovirology

Surveys of endogenous retroviruses (ERVs) in the freshwater crocodile (Crocodylus johnstoni) suggest that ERVs in Crocodylus spp. vary between species

(2015) Amanda Y. Chong et al.   VIRUS GENES

Endogenous Retroviruses in the Genomics Era

(2015) Welkin E. Johnson   Annual Review of Virology

Multiple Groups of Endogenous Epsilon-Like Retroviruses Conserved across Primates

(2014) K. Brown et al.   JOURNAL OF VIROLOGY

A Primitive Endogenous Lentivirus in a Colugo: Insights into the Early Evolution of Lentiviruses

(2014) Guan-Zhu Han et al.   MOLECULAR BIOLOGY AND EVOLUTION

CDD: NCBI's conserved domain database

(2014) Aron Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

Pan-vertebrate comparative genomics unmasks retrovirus macroevolution

(2014) Alexander Hayward et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolution and gene capture in ancient endogenous retroviruses - insights from the crocodilian genomes

(2014) Amanda Y Chong et al.   Retrovirology

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Broad-scale phylogenomics provides insights into retrovirus-host evolution

(2013) A. Hayward et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Extraordinary Evolutionary History of the Reticuloendotheliosis Viruses

(2013) Anna Maria Niewiadomska et al.   PLOS BIOLOGY

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

Endogenous Lentiviral Elements in the Weasel Family (Mustelidae)

(2012) G.-Z. Han et al.   MOLECULAR BIOLOGY AND EVOLUTION

Studies of endogenous retroviruses reveal a continuing evolutionary saga

(2012) Jonathan P. Stoye   NATURE REVIEWS MICROBIOLOGY

Env-less endogenous retroviruses are genomic superspreaders

(2012) G. Magiorkinis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Unexpected Diversity and Expression of Avian Endogenous Retroviruses

(2012) M. Bolisetty et al.   mBio

The Evolution of Endogenous Viral Elements

(2011) Edward C. Holmes   Cell Host & Microbe

Paleovirology—ghosts and gifts of viruses past

(2011) Maulik R Patel et al.   Current Opinion in Virology

Jane: a new tool for the cophylogeny reconstruction problem

(2010) Chris Conow et al.   Algorithms for Molecular Biology

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

The Impact of Conservation on the Status of the World's Vertebrates

(2010) M. Hoffmann et al.   SCIENCE

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Network dynamics of eukaryotic LTR retroelements beyond phylogenetic trees

(2009) Carlos Llorens et al.   Biology Direct

A transitional endogenous lentivirus from the genome of a basal primate and implications for lentivirus evolution

(2008) R. J. Gifford et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA