标题
Removing contaminants from databases of draft genomes
作者
关键词
Genomic databases, Mammalian genomics, Bird genomics, Sequence databases, Eukaryota, Fungal genomics, Cornea, Genome analysis
出版物
PLoS Computational Biology
Volume 14, Issue 6, Pages e1006277
出版商
Public Library of Science (PLoS)
发表日期
2018-06-26
DOI
10.1371/journal.pcbi.1006277
参考文献
相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。- EuPathDB: the eukaryotic pathogen genomics database resource
- (2016) Cristina Aurrecoechea et al. NUCLEIC ACIDS RESEARCH
- Human Contamination in Public Genome Assemblies
- (2016) Kirill Kryukov et al. PLoS One
- Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation
- (2015) Nuala A. O'Leary et al. NUCLEIC ACIDS RESEARCH
- Large-scale contamination of microbial isolate genomes by Illumina PhiX control
- (2015) Supratim Mukherjee et al. Standards in Genomic Sciences
- Actionable Diagnosis of Neuroleptospirosis by Next-Generation Sequencing
- (2014) Michael R. Wilson et al. NEW ENGLAND JOURNAL OF MEDICINE
- GenBank
- (2014) Dennis A. Benson et al. NUCLEIC ACIDS RESEARCH
- Kraken: ultrafast metagenomic sequence classification using exact alignments
- (2014) Derrick E Wood et al. GENOME BIOLOGY
- Unexpected cross-species contamination in genome sequencing projects
- (2014) Samier Merchant et al. PeerJ
- A Culture-Independent Sequence-Based Metagenomics Approach to the Investigation of an Outbreak of Shiga-Toxigenic Escherichia coli O104:H4
- (2013) Nicholas J. Loman et al. JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION
- Rapid Whole-Genome Sequencing for Detection and Characterization of Microorganisms Directly from Clinical Samples
- (2013) H. Hasman et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Metagenomic microbial community profiling using unique clade-specific marker genes
- (2012) Nicola Segata et al. NATURE METHODS
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Abundant Human DNA Contamination Identified in Non-Primate Genome Databases
- (2011) Mark S. Longo et al. PLoS One
- Recent progress and understanding of the molecular mechanisms of the rice-Magnaporthe oryzaeinteraction
- (2010) JINLING LIU et al. MOLECULAR PLANT PATHOLOGY
- African great apes are natural hosts of multiple related malaria species, including Plasmodium falciparum
- (2010) F. Prugnolle et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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