Bayesian inference of phylogenetic networks from bi-allelic genetic markers

Bayesian Inference of Species Networks from Multilocus Sequence Data

(2017) Chi Zhang et al.   MOLECULAR BIOLOGY AND EVOLUTION

In the light of deep coalescence: revisiting trees within networks

(2016) Jiafan Zhu et al.   BMC BIOINFORMATICS

Reticulate evolutionary history and extensive introgression in mosquito species revealed by phylogenetic network analysis

(2016) Dingqiao Wen et al.   MOLECULAR ECOLOGY

Implementing and testing the multispecies coalescent model: A valuable paradigm for phylogenomics

(2016) Scott V. Edwards et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The gene tree delusion

(2016) Mark S. Springer et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Bayesian Inference of Reticulate Phylogenies under the Multispecies Network Coalescent

(2016) Dingqiao Wen et al.   PLoS Genetics

Inferring Phylogenetic Networks with Maximum Pseudolikelihood under Incomplete Lineage Sorting

(2016) Claudia Solís-Lemus et al.   PLoS Genetics

How reticulated are species?

(2015) James Mallet et al.   BIOESSAYS

A maximum pseudo-likelihood approach for phylogenetic networks

(2015) Yun Yu et al.   BMC GENOMICS

Evidence for archaic adaptive introgression in humans

(2015) Fernando Racimo et al.   NATURE REVIEWS GENETICS

Quartet Inference from SNP Data Under the Coalescent Model

(2014) Julia Chifman et al.   BIOINFORMATICS

Maximum likelihood inference of reticulate evolutionary histories

(2014) Yun Yu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Interspecific introgressive origin of genomic diversity in the house mouse

(2014) Kevin J. Liu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Extensive introgression in a malaria vector species complex revealed by phylogenomics

(2014) M. C. Fontaine et al.   SCIENCE

Fast algorithms and heuristics for phylogenomics under ILS and hybridization

(2013) Yun Yu et al.   BMC BIOINFORMATICS

Inferring Species Trees Directly from Biallelic Genetic Markers: Bypassing Gene Trees in a Full Coalescent Analysis

(2012) David Bryant et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Probability of a Gene Tree Topology within a Phylogenetic Network with Applications to Hybridization Detection

(2012) Yun Yu et al.   PLoS Genetics

COALESCENT-BASED SPECIES TREE INFERENCE FROM GENE TREE TOPOLOGIES UNDER INCOMPLETE LINEAGE SORTING BY MAXIMUM LIKELIHOOD

(2011) Yufeng Wu   EVOLUTION

Species delimitation and phylogeny of a New Zealand plant species radiation

(2009) Heidi M Meudt et al.   BMC EVOLUTIONARY BIOLOGY

A Metric on the Space of Reduced Phylogenetic Networks

(2009) Luay Nakhleh   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Bayesian Inference of Species Trees from Multilocus Data

(2009) J. Heled et al.   MOLECULAR BIOLOGY AND EVOLUTION

Divergence population genetic analysis of hybridization between rhesus and cynomolgus macaques

(2009) LAURIE S. STEVISON et al.   MOLECULAR ECOLOGY

BEST: Bayesian estimation of species trees under the coalescent model

(2008) L. Liu   BIOINFORMATICS

PhyloNet: a software package for analyzing and reconstructing reticulate evolutionary relationships

(2008) Cuong Than et al.   BMC BIOINFORMATICS

The role of hybridization in evolution

(2003) N. H. Barton   MOLECULAR ECOLOGY