Inferring Species Trees Directly from Biallelic Genetic Markers: Bypassing Gene Trees in a Full Coalescent Analysis

Importance sampling and the two-locus model with subdivided population structure

(2016) Robert C. Griffiths et al.   ADVANCES IN APPLIED PROBABILITY

COALESCENT-BASED SPECIES TREE INFERENCE FROM GENE TREE TOPOLOGIES UNDER INCOMPLETE LINEAGE SORTING BY MAXIMUM LIKELIHOOD

(2011) Yufeng Wu   EVOLUTION

Composite likelihood-based inferences on genetic data from dependent loci

(2010) Arindam RoyChoudhury   JOURNAL OF MATHEMATICAL BIOLOGY

Reconstructing Population Histories from Single Nucleotide Polymorphism Data

(2010) J. Siren et al.   MOLECULAR BIOLOGY AND EVOLUTION

STEM: species tree estimation using maximum likelihood for gene trees under coalescence

(2009) Laura S. Kubatko et al.   BIOINFORMATICS

Species delimitation and phylogeny of a New Zealand plant species radiation

(2009) Heidi M Meudt et al.   BMC EVOLUTIONARY BIOLOGY

Bayesian Inference of Species Trees from Multilocus Data

(2009) J. Heled et al.   MOLECULAR BIOLOGY AND EVOLUTION

Gene tree discordance, phylogenetic inference and the multispecies coalescent

(2009) James H. Degnan et al.   TRENDS IN ECOLOGY & EVOLUTION

Inferring the Joint Demographic History of Multiple Populations from Multidimensional SNP Frequency Data

(2009) Ryan N. Gutenkunst et al.   PLoS Genetics