Examination of Csr regulatory circuitry using epistasis analysis with RNA-seq (Epi-seq) confirms that CsrD affects gene expression via CsrA, CsrB and CsrC

Circuitry Linking the Global Csr- and σ E -Dependent Cell Envelope Stress Response Systems

(2017) Helen Yakhnin et al.   JOURNAL OF BACTERIOLOGY

Alternative pathways for Escherichia coli biofilm formation revealed by sRNA overproduction

(2017) Ashley Parker et al.   MOLECULAR MICROBIOLOGY

Integrative FourD omics approach profiles the target network of the carbon storage regulatory system

(2017) Steven W. Sowa et al.   NUCLEIC ACIDS RESEARCH

Translational Repression of the RpoS Antiadapter IraD by CsrA Is Mediated via Translational Coupling to a Short Upstream Open Reading Frame

(2017) Hongmarn Park et al.   mBio

Global role of the bacterial post-transcriptional regulator CsrA revealed by integrated transcriptomics

(2017) Anastasia H. Potts et al.   Nature Communications

Global RNA recognition patterns of post‐transcriptional regulators Hfq and CsrA revealed by UV crosslinkingin vivo

(2016) Erik Holmqvist et al.   EMBO JOURNAL

Antagonistic control of the turnover pathway for the global regulatory sRNA CsrB by the CsrA and CsrD proteins

(2016) Christopher A. Vakulskas et al.   NUCLEIC ACIDS RESEARCH

The Csr system regulates genome-wide mRNA stability and transcription and thus gene expression in Escherichia coli

(2016) Thomas Esquerré et al.   Scientific Reports

CsrA Participates in a PNPase Autoregulatory Mechanism by Selectively Repressing Translation ofpnpTranscripts That Have Been Previously Processed by RNase III and PNPase

(2015) Hongmarn Park et al.   JOURNAL OF BACTERIOLOGY

Regulation of Bacterial Virulence by Csr (Rsm) Systems

(2015) Christopher A. Vakulskas et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Regulation of CsrB/C sRNA decay by EIIAGlcof the phosphoenolpyruvate: carbohydrate phosphotransferase system

(2015) Yuanyuan Leng et al.   MOLECULAR MICROBIOLOGY

Why weight? Modelling sample and observational level variability improves power in RNA-seq analyses

(2015) Ruijie Liu et al.   NUCLEIC ACIDS RESEARCH

Genomic Targets and Features of BarA-UvrY (-SirA) Signal Transduction Systems

(2015) Tesfalem R. Zere et al.   PLoS One

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

RNA remodeling by bacterial global regulator CsrA promotes Rho-dependent transcription termination

(2014) N. Figueroa-Bossi et al.   GENES & DEVELOPMENT

Effects of the Global Regulator CsrA on the BarA/UvrY Two-Component Signaling System

(2014) Martha I. Camacho et al.   JOURNAL OF BACTERIOLOGY

Expanding control in bacteria: interplay between small RNAs and transcriptional regulators to control gene expression

(2013) Pierre Mandin et al.   CURRENT OPINION IN MICROBIOLOGY

A novel CsrA titration mechanism regulates fimbrial gene expression in Salmonella typhimurium

(2013) Torsten Sterzenbach et al.   EMBO JOURNAL

Dual function of the McaS small RNA in controlling biofilm formation

(2013) M. G. Jorgensen et al.   GENES & DEVELOPMENT

CsrA activatesflhDCexpression by protectingflhDCmRNA from RNase E-mediated cleavage

(2013) Alexander V. Yakhnin et al.   MOLECULAR MICROBIOLOGY

Rapid and robust signaling in the CsrA cascade via RNA-protein interactions and feedback regulation

(2013) D. N. Adamson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dual Posttranscriptional Regulation via a Cofactor-Responsive mRNA Leader

(2012) Laura M. Patterson-Fortin et al.   JOURNAL OF MOLECULAR BIOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Rewiring two-component signal transduction with small RNAs

(2011) Yvonne Göpel et al.   CURRENT OPINION IN MICROBIOLOGY

Translational Repression of NhaR, a Novel Pathway for Multi-Tier Regulation of Biofilm Circuitry by CsrA

(2011) A. Pannuri et al.   JOURNAL OF BACTERIOLOGY

Circuitry linking the Csr and stringent response global regulatory systems

(2011) Adrianne N. Edwards et al.   MOLECULAR MICROBIOLOGY

The Physiological Stimulus for the BarA Sensor Kinase

(2010) R. Gonzalez Chavez et al.   JOURNAL OF BACTERIOLOGY

The RNA Binding Protein CsrA Is a Pleiotropic Regulator of the Locus of Enterocyte Effacement Pathogenicity Island of Enteropathogenic Escherichia coli

(2009) S. Bhatt et al.   INFECTION AND IMMUNITY

Roles of pgaABCD Genes in Synthesis, Modification, and Export of the Escherichia coli Biofilm Adhesin Poly- -1,6-N-Acetyl-D-Glucosamine

(2008) Y. Itoh et al.   JOURNAL OF BACTERIOLOGY

The RNA binding protein CsrA controls cyclic di-GMP metabolism by directly regulating the expression of GGDEF proteins

(2008) Kristina Jonas et al.   MOLECULAR MICROBIOLOGY