PhosContext2vec: a distributed representation of residue-level sequence contexts and its application to general and kinase-specific phosphorylation site prediction
出版年份 2018 全文链接
标题
PhosContext2vec: a distributed representation of residue-level sequence contexts and its application to general and kinase-specific phosphorylation site prediction
作者
关键词
-
出版物
Scientific Reports
Volume 8, Issue 1, Pages -
出版商
Springer Nature
发表日期
2018-05-22
DOI
10.1038/s41598-018-26392-7
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- PhosphoPredict: A bioinformatics tool for prediction of human kinase-specific phosphorylation substrates and sites by integrating heterogeneous feature selection
- (2017) Jiangning Song et al. Scientific Reports
- Predicting the errors of predicted local backbone angles and non-local solvent- accessibilities of proteins by deep neural networks
- (2016) Jianzhao Gao et al. BIOINFORMATICS
- Sixty-five years of the long march in protein secondary structure prediction: the final stretch?
- (2016) Yuedong Yang et al. BRIEFINGS IN BIOINFORMATICS
- DAPPLE 2: a Tool for the Homology-Based Prediction of Post-Translational Modification Sites
- (2016) Brett Trost et al. JOURNAL OF PROTEOME RESEARCH
- GlycoMine: a machine learning-based approach for predicting N-, C- and O-linked glycosylation in the human proteome
- (2015) Fuyi Li et al. BIOINFORMATICS
- Improving prediction of secondary structure, local backbone angles and solvent accessible surface area of proteins by iterative deep learning
- (2015) Rhys Heffernan et al. Scientific Reports
- Continuous Distributed Representation of Biological Sequences for Deep Proteomics and Genomics
- (2015) Ehsaneddin Asgari et al. PLoS One
- PhosphoSVM: prediction of phosphorylation sites by integrating various protein sequence attributes with a support vector machine
- (2014) Yongchao Dou et al. AMINO ACIDS
- PhosphoPICK: modelling cellular context to map kinase-substrate phosphorylation events
- (2014) Ralph Patrick et al. BIOINFORMATICS
- DISOPRED3: precise disordered region predictions with annotated protein-binding activity
- (2014) David T. Jones et al. BIOINFORMATICS
- UniProt: a hub for protein information
- (2014) NUCLEIC ACIDS RESEARCH
- Accurate in silico identification of species-specific acetylation sites by integrating protein sequence-derived and functional features
- (2014) Yuan Li et al. Scientific Reports
- Cascleave 2.0, a new approach for predicting caspase and granzyme cleavage targets
- (2013) Mingjun Wang et al. BIOINFORMATICS
- Scalable web services for the PSIPRED Protein Analysis Workbench
- (2013) Daniel W. A. Buchan et al. NUCLEIC ACIDS RESEARCH
- From protein sequence to dynamics and disorder with DynaMine
- (2013) Elisa Cilia et al. Nature Communications
- TANGLE: Two-Level Support Vector Regression Approach for Protein Backbone Torsion Angle Prediction from Primary Sequences
- (2012) Jiangning Song et al. PLoS One
- L1pred: A Sequence-Based Prediction Tool for Catalytic Residues in Enzymes with the L1-logreg Classifier
- (2012) Yongchao Dou et al. PLoS One
- PROSPER: An Integrated Feature-Based Tool for Predicting Protease Substrate Cleavage Sites
- (2012) Jiangning Song et al. PLoS One
- A Mechanism for the Evolution of Phosphorylation Sites
- (2011) Samuel M. Pearlman et al. CELL
- Cascleave: towards more accurate prediction of caspase substrate cleavage sites
- (2010) Jiangning Song et al. BIOINFORMATICS
- A comparative study of conservation and variation scores
- (2010) Fredrik Johansson et al. BMC BIOINFORMATICS
- Musite, a Tool for Global Prediction of General and Kinase-specific Phosphorylation Sites
- (2010) Jianjiong Gao et al. MOLECULAR & CELLULAR PROTEOMICS
- Phospho.ELM: a database of phosphorylation sites--update 2011
- (2010) H. Dinkel et al. NUCLEIC ACIDS RESEARCH
- RegPhos: a system to explore the protein kinase–substrate phosphorylation network in humans
- (2010) Tzong-Yi Lee et al. NUCLEIC ACIDS RESEARCH
- GPS 2.1: enhanced prediction of kinase-specific phosphorylation sites with an algorithm of motif length selection
- (2010) Y. Xue et al. PROTEIN ENGINEERING DESIGN & SELECTION
- Quantitative Phosphoproteomics Reveals Widespread Full Phosphorylation Site Occupancy During Mitosis
- (2010) J. V. Olsen et al. Science Signaling
- PhosPhAt: the Arabidopsis thaliana phosphorylation site database. An update
- (2009) Pawel Durek et al. NUCLEIC ACIDS RESEARCH
- GPS 2.0, a Tool to Predict Kinase-specific Phosphorylation Sites in Hierarchy
- (2008) Yu Xue et al. MOLECULAR & CELLULAR PROTEOMICS
- PhosphoPep—a database of protein phosphorylation sites in model organisms
- (2008) Bernd Bodenmiller et al. NATURE BIOTECHNOLOGY
- Human Protein Reference Database--2009 update
- (2008) T. S. Keshava Prasad et al. NUCLEIC ACIDS RESEARCH
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