How nanoscale protein interactions determine the mesoscale dynamic organisation of bacterial outer membrane proteins

Intermembrane crosstalk drives inner-membrane protein organization in Escherichia coli

(2018) Patrice Rassam et al.   Nature Communications

CHARMM-GUI Martini Maker for modeling and simulation of complex bacterial membranes with lipopolysaccharides

(2017) Pin-Chia Hsu et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

It Is Complicated: Curvature, Diffusion, and Lipid Sorting within the Two Membranes of Escherichia coli

(2017) Pin-Chia Hsu et al.   Journal of Physical Chemistry Letters

Biased partitioning of the multidrug efflux pump AcrAB-TolC underlies long-lived phenotypic heterogeneity

(2017) Tobias Bergmiller et al.   SCIENCE

Glasslike Membrane Protein Diffusion in a Crowded Membrane

(2016) Ignacio Munguira et al.   ACS Nano

Lipid interaction sites on channels, transporters and receptors: Recent insights from molecular dynamics simulations

(2016) George Hedger et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES

Role of the Native Outer-Membrane Environment on the Transporter BtuB

(2016) Curtis Balusek et al.   BIOPHYSICAL JOURNAL

Automatic detection of diffusion modes within biological membranes using back-propagation neural network

(2016) Patrice Dosset et al.   BMC BIOINFORMATICS

Molecular dynamics simulations of membrane proteins and their interactions: from nanoscale to mesoscale

(2016) Matthieu Chavent et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Computational ‘microscopy’ of cellular membranes

(2016) Helgi I. Ingólfsson et al.   JOURNAL OF CELL SCIENCE

Divergent Diffusion Coefficients in Simulations of Fluids and Lipid Membranes

(2016) Martin Vögele et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Confined diffusion of transmembrane proteins and lipids induced by the same actin meshwork lining the plasma membrane

(2016) Takahiro K. Fujiwara et al.   MOLECULAR BIOLOGY OF THE CELL

Structural basis of outer membrane protein insertion by the BAM complex

(2016) Yinghong Gu et al.   NATURE

The source of high signal cooperativity in bacterial chemosensory arrays

(2016) Germán E. Piñas et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Membrane stiffness is modified by integral membrane proteins

(2016) Philip W. Fowler et al.   Soft Matter

Dynamics of Crowded Vesicles: Local and Global Responses to Membrane Composition

(2016) Daniel A. Holdbrook et al.   PLoS One

Protein–protein interactions and the spatiotemporal dynamics of bacterial outer membrane proteins

(2015) Colin Kleanthous et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

A Peptidomimetic Antibiotic Targets Outer Membrane Proteins and Disrupts Selectively the Outer Membrane inEscherichia coli

(2015) Matthias Urfer et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Receptor dimerization dynamics as a regulatory valve for plasticity of type I interferon signaling

(2015) Stephan Wilmes et al.   JOURNAL OF CELL BIOLOGY

Organization and Dynamics of Receptor Proteins in a Plasma Membrane

(2015) Heidi Koldsø et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Supramolecular assemblies underpin turnover of outer membrane proteins in bacteria

(2015) Patrice Rassam et al.   NATURE

Quantifying Absolute Protein Synthesis Rates Reveals Principles Underlying Allocation of Cellular Resources

(2014) Gene-Wei Li et al.   CELL

Multi-protein assemblies underlie the mesoscale organization of the plasma membrane

(2014) Sinem K. Saka et al.   Nature Communications

The Free Energy Landscape of Dimerization of a Membrane Protein, NanC

(2014) Thomas A. Dunton et al.   PLoS Computational Biology

Lipid Clustering Correlates with Membrane Curvature as Revealed by Molecular Simulations of Complex Lipid Bilayers

(2014) Heidi Koldsø et al.   PLoS Computational Biology

Perspective on the Martini model

(2013) Siewert J. Marrink et al.   CHEMICAL SOCIETY REVIEWS

Single-molecule imaging of the functional crosstalk between surface NMDA and dopamine D1 receptors

(2013) L. Ladepeche et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Reduced Lateral Mobility of Lipids and Proteins in Crowded Membranes

(2013) Joseph E. Goose et al.   PLoS Computational Biology

Anomalous and normal diffusion of proteins and lipids in crowded lipid membranes

(2012) Matti Javanainen et al.   FARADAY DISCUSSIONS

Improved Parameters for the Martini Coarse-Grained Protein Force Field

(2012) Djurre H. de Jong et al.   Journal of Chemical Theory and Computation

NIH Image to ImageJ: 25 years of image analysis

(2012) Caroline A Schneider et al.   NATURE METHODS

Characterization of the motion of membrane proteins using high-speed atomic force microscopy

(2012) Ignacio Casuso et al.   Nature Nanotechnology

Organization, dynamics, and segregation of Ras nanoclusters in membrane domains

(2012) L. Janosi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Analysis of Surface Protein Expression Reveals the Growth Pattern of the Gram-Negative Outer Membrane

(2012) Tristan S. Ursell et al.   PLoS Computational Biology

Reconstitution of Membrane Proteins into Polymer-Supported Membranes for Probing Diffusion and Interactions by Single Molecule Techniques

(2011) Friedrich Roder et al.   ANALYTICAL CHEMISTRY

The NumPy Array: A Structure for Efficient Numerical Computation

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Membrane protein sequestering by ionic protein–lipid interactions

(2011) Geert van den Bogaart et al.   NATURE

Hierarchical mesoscale domain organization of the plasma membrane

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g_membed: Efficient insertion of a membrane protein into an equilibrated lipid bilayer with minimal perturbation

(2010) Maarten G. Wolf et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Membrane Proteins Diffuse as Dynamic Complexes with Lipids

(2010) Perttu S. Niemelä et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

HIV-1 Assembly Differentially Alters Dynamics and Partitioning of Tetraspanins and Raft Components

(2010) Dimitry N. Krementsov et al.   TRAFFIC

Combining an Elastic Network With a Coarse-Grained Molecular Force Field: Structure, Dynamics, and Intermolecular Recognition

(2009) Xavier Periole et al.   Journal of Chemical Theory and Computation

Lateral Diffusion of Membrane Proteins

(2009) Sivaramakrishnan Ramadurai et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

The MARTINI Coarse-Grained Force Field: Extension to Proteins

(2008) Luca Monticelli et al.   Journal of Chemical Theory and Computation

GROMACS 4:  Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation

(2008) Berk Hess et al.   Journal of Chemical Theory and Computation

Direct observation of the nanoscale dynamics of membrane lipids in a living cell

(2008) Christian Eggeling et al.   NATURE

Dynamic multiple-target tracing to probe spatiotemporal cartography of cell membranes

(2008) Arnauld Sergé et al.   NATURE METHODS

Protein area occupancy at the center of the red blood cell membrane

(2008) A. D. Dupuy et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Electrostatic rate enhancement and transient complex of protein–protein association

(2007) Ramzi Alsallaq et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS