Dynamics of Crowded Vesicles: Local and Global Responses to Membrane Composition

The membranes of Gram-negative bacteria: progress in molecular modelling and simulation

(2015) Syma Khalid et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

α-Synuclein Reduces Tension and Increases Undulations in Simulations of Small Unilamellar Vesicles

(2015) Anthony R. Braun et al.   BIOPHYSICAL JOURNAL

Nothing to Sneeze At: A Dynamic and Integrative Computational Model of an Influenza A Virion

(2015) Tyler Reddy et al.   STRUCTURE

Determining Structural and Mechanical Properties from Molecular Dynamics Simulations of Lipid Vesicles

(2014) Anthony R. Braun et al.   Journal of Chemical Theory and Computation

Lipid Clustering Correlates with Membrane Curvature as Revealed by Molecular Simulations of Complex Lipid Bilayers

(2014) Heidi Koldsø et al.   PLoS Computational Biology

Extracellular vesicles: biology and emerging therapeutic opportunities

(2013) Samir EL Andaloussi et al.   NATURE REVIEWS DRUG DISCOVERY

Protein-protein interactions: General trends in the relationship between binding affinity and interfacial buried surface area

(2013) Jieming Chen et al.   PROTEIN SCIENCE

Reduced Lateral Mobility of Lipids and Proteins in Crowded Membranes

(2013) Joseph E. Goose et al.   PLoS Computational Biology

Characterization of the motion of membrane proteins using high-speed atomic force microscopy

(2012) Ignacio Casuso et al.   Nature Nanotechnology

Aggregation of Model Membrane Proteins, Modulated by Hydrophobic Mismatch, Membrane Curvature, and Protein Class

(2011) Daniel L. Parton et al.   BIOPHYSICAL JOURNAL

Determination of Electron Density Profiles and Area from Simulations of Undulating Membranes

(2011) Anthony R. Braun et al.   BIOPHYSICAL JOURNAL

MDAnalysis: A toolkit for the analysis of molecular dynamics simulations

(2011) Naveen Michaud-Agrawal et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

The ELBA Force Field for Coarse-Grain Modeling of Lipid Membranes

(2011) Mario Orsi et al.   PLoS One

Molecular Simulation Approaches to Membrane Proteins

(2011) Phillip J. Stansfeld et al.   STRUCTURE

Membrane Proteins Diffuse as Dynamic Complexes with Lipids

(2010) Perttu S. Niemelä et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Concerted diffusion of lipids in raft-like membranes

(2009) Touko Apajalahti et al.   FARADAY DISCUSSIONS

Coarse-Grained Molecular Dynamics Simulations of the Energetics of Helix Insertion into a Lipid Bilayer†

(2008) Peter J. Bond et al.   BIOCHEMISTRY

Coarse-Grained Simulations of the Membrane-Active Antimicrobial Peptide Maculatin 1.1

(2008) Peter J. Bond et al.   BIOPHYSICAL JOURNAL

GROMACS 4:  Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation

(2008) Berk Hess et al.   Journal of Chemical Theory and Computation